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2017-05-30Fix spell checker errorsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration@2475 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 94422e6f356532b2db4dc5a55cbb851210b3c36d
2017-05-30Typovrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration@2472 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 457b970258b8a99519db664358c19d0dee80d879
2017-05-30Rename Gudhi_stat in Persistence representationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration@2471 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5307a48496d758110274ef021834394b0a60bf95
2017-05-30Merge gudhi_stat branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration@2470 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2067fcd13bd6d8549fccf63f1d03fd31bc783cc8
2017-05-16Modify Doxyfile to make it work with distributed MathJax.jsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/doxygen_using_mathjax@2433 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 386ef39799695204b98d43b5a2f36a1a9e91f04e
2017-05-16Add MathJax for distributionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/doxygen_using_mathjax@2432 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c0f73996dfdfe217ae2dfc2250e7866d680ae1f7
2017-05-15Use MATHJAX for doxygen documentation generation.vrouvrea
Fix pseudo code for alpha complex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/doxygen_using_mathjax@2428 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 05ce587c4ba46e164dad02766cbaca40373e3ad8
2017-05-15to check what is wrong with osxpdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2426 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 16c91d6bb2018bfb5636424ded8ad4114b0ac944
2017-05-15another cry to remove problem on osx pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2419 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4113cf4b19c33496bbee34302aa61f2d32c94442
2017-05-15Possible solution of a problem of inf on macpdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2418 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 854d171274535e6a7edf2133c0bca116b098eaa5
2017-05-09Fix Windows python module compilationvrouvrea
rips_complex_diagram_persistence_from_distance_matrix_file_example.py shall use csv_file instead of off_file git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2409 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b73613ce923e4bb72f5eae110cf290dc2215994d
2017-05-09Doc issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2407 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 59aa4cbeef583b93f5e0e4416a4cd2903643d8f0
2017-05-05Changes for file copy of data (done too many times)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2403 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 441c5e5d5f7d39c7943c9976ecbd73faa25f1ba2
2017-05-05hopefully last correction for windows.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2402 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ab60f609226827fa6e0b8d0a1932c2dc2e22c92f
2017-05-05Fixing compilation problems on windows. pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2401 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 581b7b16e31cf1c0872e8f30629acc180135db77
2017-05-04Adding corrections to cmake files.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2396 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 56eaad66d3c21f84e4965c13f2596739825fc861
2017-05-04removing additional testpdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2395 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c51e7b4a211794ab473af97cd44d6e80a82c9557
2017-05-04Fixing Marc's commentspdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2394 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 24336d02a44474c9aaed8e6ce244f1f6bb2aed3b
2017-05-02typosglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2392 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6f20690dcf711382a244eef6ce6eccab76315710
2017-04-28Removing all the elements which do not belong to the package ↵pdlotko
persistence_representations. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2388 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5d009fdd814e42af9fcbe03a41f5cbd0087d69f4
2017-04-28Answers to Vincent's comments. pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2383 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 67e837dc1620294b3538c6f4a0515be5bde53fa9
2017-04-27initial preparation to change the name of the package.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2382 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3648a6470eca09c85b60802148cc1e2462b92f79
2017-04-26Fix warningsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2381 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: db27facc0c7eec7c48233648c6df4a47f9e09697
2017-04-24Remove unused variablescjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2379 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 90fd2f0b1fe4ff48e5ba0ee69db76bed60906ec1
2017-04-24Make compilation and tests out of sourcevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2376 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0bc362b7321ed22af0c20f020eafc98efecbac46
2017-04-24Doc typovrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2375 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 181a2d688b3333b202aa7a25768413259c6c8fbd
2017-04-21Fix user version bugvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2374 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ff7a428dbe3a5c7c2b45037f66329f1061cf7f7b
2017-04-20fising the problems with tests. pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2371 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 77267b782ab7fa52172d10d84885a43ec182e436
2017-04-19Fix doc issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2368 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: aa8997eb2c66b9b25206688acc5819f2ded0e985
2017-04-19Rename tests and examples to be consistent with the naming rulesvrouvrea
xml test results is now generated out of source git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_test_windows@2364 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ae2dd1592b63f4e7da5e17655761697b6daf7dd0
2017-04-18Trying to solve the problem of missing files for the tests running in ↵pdlotko
different machines than mine. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2363 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 52d4aed08bb6fa67119867b830ca8e88f27e5b68
2017-04-18Rename CMake testsvrouvrea
Add specific GUDHI test coverage function Rename cmake/modules/GUDHI_*.txt git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_test_windows@2362 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 071b1eda7d11b1781a9601a013b88a0b2a9b7bf7
2017-04-14yet another omp.hpdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2360 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0145b3f91e0f9637957b731d82aeff777f2cc327
2017-04-14Fix doc level inconsistenciesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2359 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a8c141f6c040abcbf76f8eec21b14389ae850318
2017-04-14Remove scripts/generate_version.sh, use make user_versionvrouvrea
Remove GUDHIVersion.cmake.in (was for scripts/generate_version.sh) and CMakeLists.txt mechanism Modify src/Bitmap_cubical_complex/example/CMakeLists.txt to generate files in build directory git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2358 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 32c73be6aa9a0a6fcfde09ebf21ff38d48abf5e0
2017-04-14Fix doc level inconsistenciesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2357 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2da8fae99b18cf215de376980266f1281ac95172
2017-04-14Fix Title level inconsistenciesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2356 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 755e450afddf28f87164a8f1f22c1f58faf9658a
2017-04-14Fix Sphinx and unitary tests issuesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2354 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7852df8e3fcea5b0b7f37f79f2b8b34cfd1db62c
2017-04-14removing include omp.h from bootstrap.hpdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2353 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: be0d2e4947cae5646d4fbc040efb33c103f3b398
2017-04-14Fix to persistence landscapes. Hopefully it will now compile on osx and ↵pdlotko
Marc's computer git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2352 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: df6c5559ab5edbafc83de84b14c2e771f541b445
2017-04-14another try to fix it on osxpdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2351 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 975486207cf5d63921e0153b61352034cc4b279e
2017-04-14adding #include <functional>pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2349 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7877cb936812bfbcac61ba98534628391f64b712
2017-04-14Answer to Vincent's comments. pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2348 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 14d2d7d14089c17e4e7949b1f8e46990d0b16181
2017-04-14Try of a fix for Windows cython find mechanismvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2347 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4c93e7042d79bfea7c758e726f6393b97334c798
2017-04-13Answer to Marc's comments (MG5)pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2344 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5d2cd22cb13d74b1ca99892eb8773d8db2e7db2b
2017-04-13Answer to Vincent's comments. At the moment I need to discuss how to correct ↵pdlotko
the doc. At the moment make doxygen generate some errors. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2342 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4bb5c3b30bca852045fb414eacf59936975a3855
2017-04-12a few more correction. First of all, bottleneck distance is added (although ↵pdlotko
there is something strange in the results, FG has been pinged about this). Second of all, all the programs in utylites should now read general files (and dimension of persistence to be read is one of the parameteds of files). This still need to be tested and will be tested soon. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2339 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e60d14f07db223646597230d7f0bd78dd090bc0b
2017-04-12Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2334 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9461830172c72a205520ae197656c480b1cfcaaf
2017-04-11Fix line length cpplintvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2333 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 23035b47dd95c008feb546d7ffb17b96cd7edcfa
2017-04-11Fix some #include ""vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2332 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2c15320d156c2b928e9eb664a2afed8fa9809e7e