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2018-11-17Make it clearer that create_complex can/should be called without a second ↵glisse
argument. Move the test restricting propagation to dim>1 earlier. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/AC-glisse@4000 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 108a3ce1b96e097d5218f9154c7f17c13203cfa1
2018-11-17Simplify example.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/AC-glisse@3999 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ec94f4c900994fea36d76663a352bf9a5cf232c9
2018-11-17Repeated "if" in the doc.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/AC-glisse@3998 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 39df24b52cd76333ffcdadfb7d9102ff8c29c3c8
2018-11-16Code review : Simplex_tree is a complex not a simplexvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3996 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5b361b52c6fa4b977e807946f48bb490de5d9d87
2018-11-16Doc review : Add a note to explain setting max_alpha_square value won't ↵vrouvrea
speed up the complex creation, on the contrary. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3995 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 293e99e3946641f042f862c267baf548b08e53ca
2018-11-16Code review : Factorize some templatesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3994 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fe719a7bae84c6378bc9dc583de97414e6f8cf74
2018-11-16Doc review : Bad copy/pastevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/toplex_map@3993 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 20fe516698230f532c38535ec21b89dc12b7a9d9
2018-11-16Doc review : "shall be of complexity ***type***"vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3992 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8ab7645755e3aa0211d39935db6edeb059c05b43
2018-11-16Code review : Boost minimal version is now 1.56. No more need to test if < 1.53.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3991 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a38b391f763d9aa0aff7746f3a82ee305386b28e
2018-11-16Doc review : User version bad description for Alpha complex 3dvrouvrea
Add a comment for alpha complex 3d example creation for templates Code review : SAFE is now the default version git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3990 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a283cc630ac78634d6700aefb981d130c9464024
2018-11-16Add some tests for empty toplex managementvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/toplex_map@3989 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 37ae2287e7905210bc2e699eacbc656ba873e40d
2018-11-16Doc review : Rephrase remove_vertex docvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/toplex_map@3988 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9930dc524fb4d646135a53e07cc8b8934528442d
2018-11-16Code review : No need to use Toplex_map::Vertex inside Toplex_map classvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/toplex_map@3987 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1e419e7d7efbfdc47a250c32209613f48ab46745
2018-11-16Doc review : Simplicial complex terms instead of toplex map ones.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/toplex_map@3986 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5f8c05b80f6cb4db8f64aaaf33869495a3e7be7b
2018-11-16Doc review : Simplicial complex terms instead of toplex map ones.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/toplex_map@3985 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b8debf06602f03185929ac7b33e2b49ea69deaad
2018-11-16Doc review : Gamma_0 instead of gamma_0 to be like in the papervrouvrea
toplices is the plural form of toplex (not a set of toplex) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/toplex_map@3984 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4cfeebffcbf9006fd98bbf32a8dbd9eb683c9bf5
2018-11-14Fix cpplintvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3981 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6ce28c75070b0f5d962472f5452e4b03fccbd94f
2018-11-14Merge last trunk modifications and resolve conflict on ↵vrouvrea
src/Alpha_complex/utilities/alphacomplex.md git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3979 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2a63709432810154d7939e9bdd74f9d55d0aee43
2018-11-14Fix https://github.com/CGAL/cgal/issues/3153vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3978 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 41b598d277452a2ebcf9eedc3a7e144d96e46b1d
2018-11-14Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/simplex_tree_fix_vincent@3976 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b246c9007b06ed57d59dc1d18b02262d9c765fb9
2018-11-01changes example compilation in GUDHI_modules.cmakemcarrier
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@3973 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5e0b803f01774750a9b63f9d691d30b3c625ccd1
2018-10-31git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@3971 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 55e1647f8361d2fb59ea672091d30d6697b887dc
2018-10-31Make dependency with boost 1.56 instead of 1.48vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_1.56_vincent@3967 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a5941b8c4f65ec8e6f62117aceb5f22e0142f255
2018-10-24True interleaving distance for the sparse Rips.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3964 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6c342750c0ea2e7d48e8c3fc9cc2a4d04f8b379b
2018-10-18Add persistence_dim_max argument in simplex tree persistence documentationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3963 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ef8f3b0c2b0e3cdbda73687f1e65877213918830
2018-10-17Alpha complex 3d test was not checking CGAL is 4.11vrouvrea
Rewrite CMakeLists.txt to detect CGAL 4.11 for Alpha complex 3d git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3962 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7ccddf06201760ef4fddc4432a3b208b8b0213f7
2018-10-17Merge branch sparserips-pythonvrouvrea
Fix doxygen bad link on sparsify point set function Fix some lines too long git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3961 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 94946e2dd7853bd65d6790546ad2ef8a35d298c1
2018-10-17Some indentation fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-python@3960 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6dce53b98bc0b299a3621602f385b3b44e16d489
2018-10-16Add copyrightsvrouvrea
Fix cpplint git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/toplex_map@3959 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 02c873347468e28d50f0c8ac385be988c07c96df
2018-10-16Remove Filtered_toplex_map and its derivativevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/toplex_map@3958 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2833261794ce5bda7a0e120cde6a7851553bd00c
2018-10-16Rename Lazy_Toplex_map accordingly to code conventionsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/toplex_map@3957 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7e73d088dbc458f42219e6f7a50baf98d8db65ed
2018-10-16Add lazy_toplex_map_unit_testvrouvrea
Class documentation rewrite Fix conventions in code git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/toplex_map@3956 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 65f79ee3c0f22157b2cedfc498e5d9c97dd055f6
2018-10-16Toplex definitionvrouvrea
Remove witness complex graph to compare Toplex_map vs Simplex_tree git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/toplex_map@3955 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5a1fc1be157b74963faa98b7844b8b47e54a82b6
2018-10-16Resize map.pngvrouvrea
Add simple_toplex_map in test git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/toplex_map@3954 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8899f42427e297b4527147a051adab1f9e8850dd
2018-10-15Toplex_map indentationvrouvrea
simple toplex map example git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/toplex_map@3953 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 253f001adf27dbe8318ae12996f32b07e4fab139
2018-10-15Remove Simplex tree edge contraction that seg faultvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/toplex_map@3952 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c2ac4648bed0cf72d1a1bfa0697708f04e258ec5
2018-10-15Add num_vertices methodvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/toplex_map@3951 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f91b42722e47c05da799ac40038f9f12eb70f974
2018-10-12Add some unitary testsvrouvrea
num_maximum_simplices results are a bit strange git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/toplex_map@3950 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 86c7a4607f9d774c89c79dcc6d95f1ce2f5951d5
2018-10-12Remove all documentation from user manualvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/toplex_map@3949 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ef6f0dd7622590ae3d550162174120c2e0406cb7
2018-10-12Bad comment for lazy num_maximal_simplicesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/toplex_map@3948 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f0926058af8b0cfc77c9346feda6f6c4db2c9828
2018-10-12Rename num_simplices num_maximal_simplicesvrouvrea
Make unitary tests working git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/toplex_map@3947 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: eddea297f7cf6a0fd172ceaa3fbb28b6e3cb2e63
2018-10-12Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/toplex_map@3946 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 213c7b76c5f8c3248b24a2ac9250ed59034d8076
2018-10-10Make RipsComplex a clickable linkglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-python@3942 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 642ae449f85cf8516fc632716ea14b22f74ec517
2018-10-10add myself as coauthorglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-python@3941 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 61cf8acdce3bc5cb0c8261166e195eccc3f8bb54
2018-10-10add example to the list of examplesglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-python@3940 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fe3c41785e3bb72766f7a817851583f82b9f7d15
2018-10-10epsilon + code blockglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-python@3939 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6a88d96a67d9d02f95e63fd627c295abebb49ce8
2018-10-10Use math instead of unicode for epsilonglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-python@3938 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8cccce774b7406d90a55d0e2827fad6dc3855b39
2018-10-10Example text and copyright yearglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-python@3937 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6d5bf6a2c55f7c4fd4f3f5159651b3ffa057ffdd
2018-10-06Doc tweaks.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-python@3936 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3c75c674876bcb38d0a87de41d406832baf61b55
2018-10-06merge from trunkglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-python@3935 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 81f81cb6b39ece77718c8b03d408a90789946c0f
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