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2020-12-29Fix building with CGAL 5.2.Gard Spreemann
This is based on a similar fix for the alpha complex code.
2020-12-19Docstring improvements in RipsComplexUmberto Lupo
- create_simplex_tree method referred to the Delaunay triangulation instead of the flag complex - "rips" was not capitalized - "double" was used in the docs but only "float" (which has double precision) is a Python type
2020-12-14Fix sphinx error on Azure and AppveyorROUVREAU Vincent
2020-12-14Fix sphinx warning and doc identationROUVREAU Vincent
2020-12-12Merge pull request #436 from VincentRouvreau/ci_without_cgalVincent Rouvreau
Add build and tests wo cgal and eigen and wo cgal
2020-12-11code review: else branchROUVREAU Vincent
2020-12-11code review: throw an eception if collapse_edges when no Eigen3ROUVREAU Vincent
2020-12-11code review: GUDHI_USE_EIGEN3 generated by CMake in __init__.py as suggested ↵ROUVREAU Vincent
and roll back the other solution
2020-12-10Merge pull request #409 from mglisse/fardistMarc Glisse
Pass a distance function instead of a kernel to choose_n_farthest_points
2020-12-10Merge pull request #408 from mglisse/subsampleMarc Glisse
Clean-ups in subsampling
2020-12-10Fix memory leakROUVREAU Vincent
2020-12-09Fix #388ROUVREAU Vincent
2020-12-08Fix #388 for the tests to passROUVREAU Vincent
2020-12-08do not launch test_representation when no potROUVREAU Vincent
2020-12-08rollback test_representation and a CGAL condition to launch itROUVREAU Vincent
2020-12-08Make representations tests work if CGAL and/or POT is not thereROUVREAU Vincent
2020-11-30Fix pykeops 1.4.2 where version is very verbose on 2 linesROUVREAU Vincent
2020-11-26handle old boostMarc Glisse
2020-11-22Handle squared radiusMarc Glisse
Make it work without a breaking change, we can always make a change later in a separate PR.
2020-11-18merge master and resolve conflictsROUVREAU Vincent
2020-11-13Merge pull request #405 from mglisse/botnegMarc Glisse
Bottleneck distance for one point or negative coordinates
2020-11-13Test with negative coordinatesMarc Glisse
2020-11-10Revert change to the exampleMarc Glisse
It would require updating the figure.
2020-11-09Don't test the equality case in sparsify_point_set. sqrt.Marc Glisse
2020-11-09Merge remote-tracking branch 'origin/master' into fardistMarc Glisse
and remove example installation
2020-11-09static_assert messageMarc Glisse
2020-11-08Test BettiCurve with infinite valueMarc Glisse
+ black reformatting
2020-11-07Swap clip with int conversionMarc Glisse
This allows correct handling of infinite values.
2020-11-05More numpy in BettiCurveMarc Glisse
suggested by @raphaeltinarrage
2020-11-04Merge branch 'master' into weighted_alpha_complex_dDROUVREAU Vincent
2020-11-04Merge pull request #421 from mglisse/pythonfirstVincent Rouvreau
Build python first
2020-11-04import matplotlib only when necessary in examples, in function of args. ↵ROUVREAU Vincent
Tests are without matplotlib, so no need to test if present
2020-11-04Merge pull request #418 from VincentRouvreau/do_not_install_compiled_examplesVincent Rouvreau
Do not install compiled examples
2020-11-04Revert "Fix #416 by adding full path to introduction.rst - maybe strange ↵ROUVREAU Vincent
with conda or pip installation" This reverts commit 2d4c69d698df7e40709ec0e38463b4cf30ee388d.
2020-11-04Build python firstMarc Glisse
This subdirectory is built sequentially and takes a very long time. Starting it first, in a parallel build, it is still the last to end, but since it started earlier it also ends earlier. Usually I build the plugin directly with python3 setup.py build_ext --inplace -j20 But I don't think there is a natural way to do that from the makefile (except for the unlimited -j), since I doubt setuptools knows how to cooperate with make, ninja, etc to share a pool of workers.
2020-11-03Fix #415 by removing all install cmake targets from examplesROUVREAU Vincent
2020-11-03Fix #416 by adding full path to introduction.rst - maybe strange with conda ↵ROUVREAU Vincent
or pip installation
2020-11-03Merge branch 'master' into weighted_alpha_complex_dDROUVREAU Vincent
2020-11-03code review: use Marc's trick to test relative errorROUVREAU Vincent
2020-11-03code review: use relative errorROUVREAU Vincent
2020-11-03doc review: explain briefly test aimsROUVREAU Vincent
2020-11-03Add comment in code for get_boundaries if not interested in filtration valuesROUVREAU Vincent
2020-11-02Merge master and resolve conflictsROUVREAU Vincent
2020-11-01The example does not need CGAL/eigen anymore.Marc Glisse
I had done a search and replace without checking. I don't understand why there are "install" directives for examples...
2020-11-01Doc tweaks.Marc Glisse
2020-11-01Document that only double is supported.Marc Glisse
2020-10-31long lineMarc Glisse
2020-10-31s/kernel/distance/ for choose_n_farthest_points argumentMarc Glisse
2020-10-31Clean-ups in subsamplingMarc Glisse
2020-10-28emplace_backMarc Glisse
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