From f3c3312995753e35b67887f505312c9ef11e734d Mon Sep 17 00:00:00 2001
From: Vincent Rouvreau <vincent.rouvreau@inria.fr>
Date: Mon, 16 May 2022 16:43:12 +0200
Subject: Add instructions to compile gudhi in a conda env

---
 .github/how_to_compile_gudhi_in_a_conda_env.md | 97 ++++++++++++++++++++++++++
 1 file changed, 97 insertions(+)
 create mode 100644 .github/how_to_compile_gudhi_in_a_conda_env.md

(limited to '.github')

diff --git a/.github/how_to_compile_gudhi_in_a_conda_env.md b/.github/how_to_compile_gudhi_in_a_conda_env.md
new file mode 100644
index 00000000..3691b75e
--- /dev/null
+++ b/.github/how_to_compile_gudhi_in_a_conda_env.md
@@ -0,0 +1,97 @@
+# Install a conda development environment to compile GUDHI
+
+## Install miniconda
+
+Download the [installer](https://docs.conda.io/en/latest/miniconda.html) required by your system and follow the [instructions](https://conda.io/projects/conda/en/latest/user-guide/install/index.html).
+
+## Create a dedicated environment
+
+```bash
+conda install -c conda-forge mamba  # installation with mamba is faster
+conda create --name gudhi
+conda activate gudhi
+mamba install -c conda-forge python cmake doxygen eigen cgal-cpp
+```
+
+Some of the requirements are in the gudhi repository (please refer to
+[how to use github to contribute to gudhi](how_to_use_github_to_contribute_to_gudhi.md)).
+In the gudhi repository - let's call it `/workdir/gudhi` i.e. - once submodules are initialised:
+
+```bash
+pip install -r ext/gudhi-deploy/build-requirements.txt 
+pip install -r ext/gudhi-deploy/test-requirements.txt  # pytorch can be painful to install - not mandatory
+```
+
+## Compilation
+
+In order to compile all c++ utilities, examples, benchmarks, unitary tests, and python module:
+```bash
+cd /workdir/gudhi
+rm -rf build
+mkdir build
+cd build
+# To build all even examples and benchmarks
+cmake -DCMAKE_BUILD_TYPE=Release -DCMAKE_PREFIX_PATH=$CONDA_PREFIX -DWITH_GUDHI_EXAMPLE=ON -DWITH_GUDHI_BENCHMARK=ON ..
+```
+
+### Specific python compilation
+
+In order to compile only python module
+```bash
+cd /workdir/gudhi
+rm -rf build
+mkdir build
+cd build
+# To build all even examples and benchmarks
+cmake -DCMAKE_BUILD_TYPE=Release -DCMAKE_PREFIX_PATH=$CONDA_PREFIX ..
+cd src/python
+# To build python module in parallel
+python setup.py build_ext -j 16 --inplace
+# to clean the build
+# python setup.py clean --all
+```
+
+In order to use freshly compiled gudhi python module:
+```bash
+PYTHONPATH=/workdir/gudhi/build/src/python python # or ipython, jupyter, ...
+```
+
+### Specific C++ documentation generation
+
+```bash
+cd /workdir/gudhi
+rm -rf build
+mkdir build
+cd build
+# python OFF to prevent python modules search makes cmake faster
+cmake -DCMAKE_BUILD_TYPE=Release -DCMAKE_PREFIX_PATH=$CONDA_PREFIX -DWITH_GUDHI_PYTHON=OFF -DUSER_VERSION_DIR=version ..
+make user_version;
+cd version
+mkdir build
+cd build
+# python OFF to prevent python modules search makes cmake faster
+cmake -DCMAKE_BUILD_TYPE=Release -DCMAKE_PREFIX_PATH=$CONDA_PREFIX -DWITH_GUDHI_PYTHON=OFF  ..
+make doxygen 2>&1 | tee dox.log
+grep warning dox.log # Warnings can be lost with parallel doxygen
+firefox html/index.html # [optional] To display the c++ documentation. Anything else than firefox can be used.
+```
+
+### Specific python documentation generation
+
+```bash
+cd /workdir/gudhi
+rm -rf build
+mkdir build
+cd build
+# python OFF to prevent python modules search makes cmake faster - it is the next one in user version that matters
+cmake -DCMAKE_BUILD_TYPE=Release -DCMAKE_PREFIX_PATH=$CONDA_PREFIX -DWITH_GUDHI_PYTHON=OFF -DUSER_VERSION_DIR=version ..
+make user_version;
+cd version
+mkdir build
+cd build
+cmake -DCMAKE_BUILD_TYPE=Release -DCMAKE_PREFIX_PATH=$CONDA_PREFIX ..
+cd python
+# To build python module in parallel
+python setup.py build_ext -j 16 --inplace
+firefox sphinx/index.html # [optional] To display the python documentation. Anything else than firefox can be used.
+```
\ No newline at end of file
-- 
cgit v1.2.3