From 658a754397287e8de216ae91d3c9a3c492e4db2d Mon Sep 17 00:00:00 2001 From: ROUVREAU Vincent Date: Fri, 24 Apr 2020 09:00:39 +0200 Subject: Fix bibliography for sphinx --- src/python/doc/alpha_complex_user.rst | 11 ++--------- src/python/doc/bottleneck_distance_user.rst | 6 ------ src/python/doc/cubical_complex_user.rst | 7 ------- src/python/doc/index.rst | 7 ------- src/python/doc/nerve_gic_complex_ref.rst | 7 ------- src/python/doc/nerve_gic_complex_user.rst | 7 ------- src/python/doc/persistent_cohomology_user.rst | 7 ------- src/python/doc/rips_complex_user.rst | 7 ------- src/python/doc/simplex_tree_user.rst | 7 ------- src/python/doc/tangential_complex_user.rst | 8 -------- src/python/doc/wasserstein_distance_user.rst | 7 ------- src/python/doc/witness_complex_user.rst | 7 ------- src/python/doc/zbibliography.rst | 10 ++++++++++ 13 files changed, 12 insertions(+), 86 deletions(-) create mode 100644 src/python/doc/zbibliography.rst diff --git a/src/python/doc/alpha_complex_user.rst b/src/python/doc/alpha_complex_user.rst index 265a82d2..c65e62c8 100644 --- a/src/python/doc/alpha_complex_user.rst +++ b/src/python/doc/alpha_complex_user.rst @@ -10,9 +10,8 @@ Definition .. include:: alpha_complex_sum.inc `AlphaComplex` is constructing a :doc:`SimplexTree ` using -`Delaunay Triangulation `_ -:cite:`cgal:hdj-t-19b` from `CGAL `_ (the Computational Geometry Algorithms Library -:cite:`cgal:eb-19b`). +`Delaunay Triangulation `_ +from `CGAL `_ (the Computational Geometry Algorithms Library). Remarks ^^^^^^^ @@ -203,9 +202,3 @@ the program output is: [4, 5, 6] -> 22.74 [3, 6] -> 30.25 -CGAL citations --------------- - -.. bibliography:: ../../biblio/how_to_cite_cgal.bib - :filter: docname in docnames - :style: unsrt diff --git a/src/python/doc/bottleneck_distance_user.rst b/src/python/doc/bottleneck_distance_user.rst index 206fcb63..89da89d3 100644 --- a/src/python/doc/bottleneck_distance_user.rst +++ b/src/python/doc/bottleneck_distance_user.rst @@ -66,9 +66,3 @@ The output is: Bottleneck distance approximation = 0.81 Bottleneck distance value = 0.75 -Bibliography ------------- - -.. bibliography:: ../../biblio/bibliography.bib - :filter: docname in docnames - :style: unsrt diff --git a/src/python/doc/cubical_complex_user.rst b/src/python/doc/cubical_complex_user.rst index e8c94bf6..e4733653 100644 --- a/src/python/doc/cubical_complex_user.rst +++ b/src/python/doc/cubical_complex_user.rst @@ -158,10 +158,3 @@ Examples. --------- End user programs are available in python/example/ folder. - -Bibliography ------------- - -.. bibliography:: ../../biblio/bibliography.bib - :filter: docname in docnames - :style: unsrt diff --git a/src/python/doc/index.rst b/src/python/doc/index.rst index c153cdfc..13e51047 100644 --- a/src/python/doc/index.rst +++ b/src/python/doc/index.rst @@ -86,10 +86,3 @@ Point cloud utilities ********************* .. include:: point_cloud_sum.inc - -Bibliography -************ - -.. bibliography:: ../../biblio/bibliography.bib - :filter: docname in docnames - :style: unsrt diff --git a/src/python/doc/nerve_gic_complex_ref.rst b/src/python/doc/nerve_gic_complex_ref.rst index 6a81b7af..abde2e8c 100644 --- a/src/python/doc/nerve_gic_complex_ref.rst +++ b/src/python/doc/nerve_gic_complex_ref.rst @@ -12,10 +12,3 @@ Cover complexes reference manual :show-inheritance: .. automethod:: gudhi.CoverComplex.__init__ - -Bibliography ------------- - -.. bibliography:: ../../biblio/bibliography.bib - :filter: docname in docnames - :style: unsrt diff --git a/src/python/doc/nerve_gic_complex_user.rst b/src/python/doc/nerve_gic_complex_user.rst index f709ce91..9101f45d 100644 --- a/src/python/doc/nerve_gic_complex_user.rst +++ b/src/python/doc/nerve_gic_complex_user.rst @@ -313,10 +313,3 @@ the program outputs again SC.dot which gives the following visualization after u :alt: Visualization with neato Visualization with neato - -Bibliography ------------- - -.. bibliography:: ../../biblio/bibliography.bib - :filter: docname in docnames - :style: unsrt diff --git a/src/python/doc/persistent_cohomology_user.rst b/src/python/doc/persistent_cohomology_user.rst index 506fa3a7..4d743aac 100644 --- a/src/python/doc/persistent_cohomology_user.rst +++ b/src/python/doc/persistent_cohomology_user.rst @@ -111,10 +111,3 @@ We provide several example files: run these examples with -h for details on thei * :download:`rips_complex_diagram_persistence_from_distance_matrix_file_example.py <../example/rips_complex_diagram_persistence_from_distance_matrix_file_example.py>` * :download:`random_cubical_complex_persistence_example.py <../example/random_cubical_complex_persistence_example.py>` * :download:`tangential_complex_plain_homology_from_off_file_example.py <../example/tangential_complex_plain_homology_from_off_file_example.py>` - -Bibliography ------------- - -.. bibliography:: ../../biblio/bibliography.bib - :filter: docname in docnames - :style: unsrt diff --git a/src/python/doc/rips_complex_user.rst b/src/python/doc/rips_complex_user.rst index c4bbcfb6..8efb12e6 100644 --- a/src/python/doc/rips_complex_user.rst +++ b/src/python/doc/rips_complex_user.rst @@ -347,10 +347,3 @@ until dimension 1 - one skeleton graph in other words), the output is: points in the persistence diagram will be under the diagonal, and bottleneck distance and persistence graphical tool will not work properly, this is a known issue. - -Bibliography ------------- - -.. bibliography:: ../../biblio/bibliography.bib - :filter: docname in docnames - :style: unsrt diff --git a/src/python/doc/simplex_tree_user.rst b/src/python/doc/simplex_tree_user.rst index 1b272c35..3df7617f 100644 --- a/src/python/doc/simplex_tree_user.rst +++ b/src/python/doc/simplex_tree_user.rst @@ -66,10 +66,3 @@ The output is: ([1, 2], 4.0) ([1], 0.0) ([2], 4.0) - -Bibliography ------------- - -.. bibliography:: ../../biblio/bibliography.bib - :filter: docname in docnames - :style: unsrt diff --git a/src/python/doc/tangential_complex_user.rst b/src/python/doc/tangential_complex_user.rst index cf8199cc..3d45473b 100644 --- a/src/python/doc/tangential_complex_user.rst +++ b/src/python/doc/tangential_complex_user.rst @@ -194,11 +194,3 @@ The output is: Tangential contains 4 vertices. Inconsistencies has been fixed. - - -Bibliography ------------- - -.. bibliography:: ../../biblio/bibliography.bib - :filter: docname in docnames - :style: unsrt diff --git a/src/python/doc/wasserstein_distance_user.rst b/src/python/doc/wasserstein_distance_user.rst index c24da74d..c443bab5 100644 --- a/src/python/doc/wasserstein_distance_user.rst +++ b/src/python/doc/wasserstein_distance_user.rst @@ -164,10 +164,3 @@ The output is: [[0.27916667 0.55416667] [0.7375 0.7625 ] [0.2375 0.2625 ]] - -Bibliography ------------- - -.. bibliography:: ../../biblio/bibliography.bib - :filter: docname in docnames - :style: unsrt diff --git a/src/python/doc/witness_complex_user.rst b/src/python/doc/witness_complex_user.rst index 799f5444..08dcd288 100644 --- a/src/python/doc/witness_complex_user.rst +++ b/src/python/doc/witness_complex_user.rst @@ -126,10 +126,3 @@ Example2: Computing persistence using strong relaxed witness complex Here is an example of constructing a strong witness complex filtration and computing persistence on it: * :download:`euclidean_strong_witness_complex_diagram_persistence_from_off_file_example.py <../example/euclidean_strong_witness_complex_diagram_persistence_from_off_file_example.py>` - -Bibliography ------------- - -.. bibliography:: ../../biblio/bibliography.bib - :filter: docname in docnames - :style: unsrt diff --git a/src/python/doc/zbibliography.rst b/src/python/doc/zbibliography.rst new file mode 100644 index 00000000..4c377b46 --- /dev/null +++ b/src/python/doc/zbibliography.rst @@ -0,0 +1,10 @@ +:orphan: + +.. To get rid of WARNING: document isn't included in any toctree + +Bibliography +------------ + +.. bibliography:: ../../biblio/bibliography.bib + :style: unsrt + -- cgit v1.2.3