from cython cimport numeric from libcpp.vector cimport vector from libcpp.utility cimport pair """This file is part of the Gudhi Library. The Gudhi library (Geometric Understanding in Higher Dimensions) is a generic C++ library for computational topology. Author(s): Vincent Rouvreau Copyright (C) 2016 Inria This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program. If not, see . """ __author__ = "Vincent Rouvreau" __copyright__ = "Copyright (C) 2016 Inria" __license__ = "GPL v3" cdef extern from "Euclidean_strong_witness_complex_interface.h" namespace "Gudhi": cdef cppclass Euclidean_strong_witness_complex_interface "Gudhi::witness_complex::Euclidean_strong_witness_complex_interface": Euclidean_strong_witness_complex_interface(vector[vector[double]] landmarks, vector[vector[double]] witnesses) void create_simplex_tree(Simplex_tree_interface_full_featured* simplex_tree, double max_alpha_square) void create_simplex_tree(Simplex_tree_interface_full_featured* simplex_tree, double max_alpha_square, unsigned limit_dimension) vector[double] get_point(unsigned vertex) # EuclideanStrongWitnessComplex python interface cdef class EuclideanStrongWitnessComplex: """Constructs strong witness complex for given sets of witnesses and landmarks in Euclidean space. """ cdef Euclidean_strong_witness_complex_interface * thisptr # Fake constructor that does nothing but documenting the constructor def __init__(self, landmarks=None, witnesses=None): """WitnessComplex constructor. :param landmarks: A list of landmarks (in the point cloud). :type landmarks: list of list of double :param witnesses: The point cloud. :type witnesses: list of list of double """ # The real cython constructor def __cinit__(self, landmarks=None, witnesses=None): if landmarks is not None and witnesses is not None: self.thisptr = new Euclidean_strong_witness_complex_interface(landmarks, witnesses) def __dealloc__(self): if self.thisptr != NULL: del self.thisptr def __is_defined(self): """Returns true if WitnessComplex pointer is not NULL. """ return self.thisptr != NULL def create_simplex_tree(self, max_alpha_square, limit_dimension = -1): """ :param max_alpha_square: The maximum alpha square threshold the simplices shall not exceed. Default is set to infinity. :type max_alpha_square: float :returns: A simplex tree created from the Delaunay Triangulation. :rtype: SimplexTree """ simplex_tree = SimplexTree() if limit_dimension is not -1: self.thisptr.create_simplex_tree(simplex_tree.thisptr, max_alpha_square, limit_dimension) else: self.thisptr.create_simplex_tree(simplex_tree.thisptr, max_alpha_square) return simplex_tree def get_point(self, vertex): """This function returns the point corresponding to a given vertex. :param vertex: The vertex. :type vertex: int. :returns: The point. :rtype: list of float """ cdef vector[double] point = self.thisptr.get_point(vertex) return point