from gudhi import CubicalComplex """This file is part of the Gudhi Library. The Gudhi library (Geometric Understanding in Higher Dimensions) is a generic C++ library for computational topology. Author(s): Vincent Rouvreau Copyright (C) 2016 Inria This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program. If not, see . """ __author__ = "Vincent Rouvreau" __copyright__ = "Copyright (C) 2016 Inria" __license__ = "GPL v3" def test_empty_constructor(): # Try to create an empty CubicalComplex cub = CubicalComplex() assert cub.__is_defined() == False assert cub.__is_persistence_defined() == False def test_non_existing_perseus_file_constructor(): # Try to open a non existing file cub = CubicalComplex(perseus_file='pouetpouettralala.toubiloubabdou') assert cub.__is_defined() == False assert cub.__is_persistence_defined() == False def test_dimension_or_perseus_file_constructor(): # Create test file test_file = open('CubicalOneSphere.txt', 'w') test_file.write('2\n3\n3\n0\n0\n0\n0\n100\n0\n0\n0\n0\n') test_file.close() # CubicalComplex can be constructed from dimensions and # top_dimensional_cells OR from a Perseus-style file name. cub = CubicalComplex(dimensions=[3, 3], top_dimensional_cells = [1,2,3,4,5,6,7,8,9], perseus_file='CubicalOneSphere.txt') assert cub.__is_defined() == False assert cub.__is_persistence_defined() == False cub = CubicalComplex(top_dimensional_cells = [1,2,3,4,5,6,7,8,9], perseus_file='CubicalOneSphere.txt') assert cub.__is_defined() == False assert cub.__is_persistence_defined() == False cub = CubicalComplex(dimensions=[3, 3], perseus_file='CubicalOneSphere.txt') assert cub.__is_defined() == False assert cub.__is_persistence_defined() == False def test_dimension_simple_constructor(): cub = CubicalComplex(dimensions=[3, 3], top_dimensional_cells = [1,2,3,4,5,6,7,8,9]) assert cub.__is_defined() == True assert cub.__is_persistence_defined() == False assert cub.persistence() == [(0, (1.0, float('inf')))] assert cub.__is_persistence_defined() == True assert cub.betti_numbers() == [1, 0, 0] assert cub.persistent_betti_numbers(0, 1000) == [0, 0, 0] def test_user_case_simple_constructor(): cub = CubicalComplex(dimensions=[3, 3], top_dimensional_cells = [float('inf'), 0.,0.,0.,1.,0.,0.,0.,0.]) assert cub.__is_defined() == True assert cub.__is_persistence_defined() == False assert cub.persistence() == [(1, (0.0, 1.0)), (0, (0.0, float('inf')))] assert cub.__is_persistence_defined() == True other_cub = CubicalComplex(dimensions=[3, 3], top_dimensional_cells = [1000., 0.,0.,0.,1.,0.,0.,0.,0.]) assert other_cub.persistence() == [(1, (0.0, 1.0)), (0, (0.0, float('inf')))] def test_dimension_file_constructor(): # Create test file test_file = open('CubicalOneSphere.txt', 'w') test_file.write('2\n3\n3\n0\n0\n0\n0\n100\n0\n0\n0\n0\n') test_file.close() cub = CubicalComplex(perseus_file='CubicalOneSphere.txt') assert cub.__is_defined() == True assert cub.__is_persistence_defined() == False assert cub.persistence() == [(1, (0.0, 100.0)), (0, (0.0, float('inf')))] assert cub.__is_persistence_defined() == True assert cub.betti_numbers() == [1, 0, 0] assert cub.persistent_betti_numbers(0, 1000) == [1, 0, 0]