From: Gard Spreemann Date: Mon, 10 Sep 2018 05:17:29 +0200 Subject: Disable tests that use DFSG-deleted data files. --- cython/CMakeLists.txt | 30 ---------------------------- example/Nerve_GIC/CMakeLists.txt | 6 ------ example/Persistent_cohomology/CMakeLists.txt | 4 ---- example/Simplex_tree/CMakeLists.txt | 2 -- utilities/Nerve_GIC/CMakeLists.txt | 8 -------- 5 files changed, 50 deletions(-) diff --git a/cython/CMakeLists.txt b/cython/CMakeLists.txt index 829d53b..219b99e 100644 --- a/cython/CMakeLists.txt +++ b/cython/CMakeLists.txt @@ -265,36 +265,6 @@ if(CYTHON_FOUND) add_gudhi_py_test(test_bottleneck_distance) - # Cover complex - file(COPY ${CMAKE_SOURCE_DIR}/data/points/human.off DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/) - file(COPY ${CMAKE_SOURCE_DIR}/data/points/COIL_database/lucky_cat.off DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/) - file(COPY ${CMAKE_SOURCE_DIR}/data/points/COIL_database/lucky_cat_PCA1 DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/) - add_test(NAME cover_complex_nerve_example_py_test - WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR} - COMMAND ${CMAKE_COMMAND} -E env "PYTHONPATH=${CMAKE_CURRENT_BINARY_DIR}" - ${PYTHON_EXECUTABLE} "${CMAKE_CURRENT_SOURCE_DIR}/example/nerve_of_a_covering.py" - -f human.off -c 2 -r 10 -g 0.3) - - add_test(NAME cover_complex_coordinate_gic_example_py_test - WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR} - COMMAND ${CMAKE_COMMAND} -E env "PYTHONPATH=${CMAKE_CURRENT_BINARY_DIR}" - ${PYTHON_EXECUTABLE} "${CMAKE_CURRENT_SOURCE_DIR}/example/coordinate_graph_induced_complex.py" - -f human.off -c 0 -v) - - add_test(NAME cover_complex_functional_gic_example_py_test - WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR} - COMMAND ${CMAKE_COMMAND} -E env "PYTHONPATH=${CMAKE_CURRENT_BINARY_DIR}" - ${PYTHON_EXECUTABLE} "${CMAKE_CURRENT_SOURCE_DIR}/example/functional_graph_induced_complex.py" - -o lucky_cat.off - -f lucky_cat_PCA1 -v) - - add_test(NAME cover_complex_voronoi_gic_example_py_test - WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR} - COMMAND ${CMAKE_COMMAND} -E env "PYTHONPATH=${CMAKE_CURRENT_BINARY_DIR}" - ${PYTHON_EXECUTABLE} "${CMAKE_CURRENT_SOURCE_DIR}/example/voronoi_graph_induced_complex.py" - -f human.off -n 700 -v) - - add_gudhi_py_test(test_cover_complex) endif (NOT CGAL_VERSION VERSION_LESS 4.8.1) if (NOT CGAL_WITH_EIGEN3_VERSION VERSION_LESS 4.7.0) diff --git a/example/Nerve_GIC/CMakeLists.txt b/example/Nerve_GIC/CMakeLists.txt index fdecf86..f63e08e 100644 --- a/example/Nerve_GIC/CMakeLists.txt +++ b/example/Nerve_GIC/CMakeLists.txt @@ -12,16 +12,10 @@ if (NOT CGAL_VERSION VERSION_LESS 4.8.1) # Copy files for not to pollute sources when testing file(COPY "${CMAKE_SOURCE_DIR}/data/points/tore3D_1307.off" DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/) - file(COPY "${CMAKE_SOURCE_DIR}/data/points/COIL_database/lucky_cat.off" DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/) - file(COPY "${CMAKE_SOURCE_DIR}/data/points/COIL_database/lucky_cat_PCA1" DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/) add_test(NAME Nerve_GIC_example_CoordGIC COMMAND $ "${CMAKE_CURRENT_BINARY_DIR}/tore3D_1307.off" "0") - add_test(NAME Nerve_GIC_example_FuncGIC COMMAND $ - "${CMAKE_CURRENT_BINARY_DIR}/lucky_cat.off" - "${CMAKE_CURRENT_BINARY_DIR}/lucky_cat_PCA1") - install(TARGETS CoordGIC DESTINATION bin) install(TARGETS FuncGIC DESTINATION bin) diff --git a/example/Persistent_cohomology/CMakeLists.txt b/example/Persistent_cohomology/CMakeLists.txt index 0f73151..4cac586 100644 --- a/example/Persistent_cohomology/CMakeLists.txt +++ b/example/Persistent_cohomology/CMakeLists.txt @@ -28,10 +28,6 @@ add_test(NAME Persistent_cohomology_example_from_rips_step_by_step_on_tore_3D CO "${CMAKE_SOURCE_DIR}/data/points/tore3D_1307.off" "-r" "0.25" "-m" "0.5" "-d" "3" "-p" "3") add_test(NAME Persistent_cohomology_example_via_boundary_matrix COMMAND $ "${CMAKE_SOURCE_DIR}/data/points/Kl.off" "-r" "0.16" "-d" "3" "-p" "3" "-m" "100") -add_test(NAME Persistent_cohomology_example_from_file_3_2_0 COMMAND $ - "${CMAKE_SOURCE_DIR}/data/filtered_simplicial_complex/bunny_5000_complex.fsc" "-p" "2" "-m" "0") -add_test(NAME Persistent_cohomology_example_from_file_3_3_100 COMMAND $ - "${CMAKE_SOURCE_DIR}/data/filtered_simplicial_complex/bunny_5000_complex.fsc" "-p" "3" "-m" "100") install(TARGETS plain_homology DESTINATION bin) install(TARGETS persistence_from_simple_simplex_tree DESTINATION bin) diff --git a/example/Simplex_tree/CMakeLists.txt b/example/Simplex_tree/CMakeLists.txt index 857e851..48bb069 100644 --- a/example/Simplex_tree/CMakeLists.txt +++ b/example/Simplex_tree/CMakeLists.txt @@ -29,8 +29,6 @@ if(GMP_FOUND AND CGAL_FOUND) if (TBB_FOUND) target_link_libraries(Simplex_tree_example_alpha_shapes_3_from_off ${TBB_LIBRARIES}) endif() - add_test(NAME Simplex_tree_example_alpha_shapes_3_from_off COMMAND $ - "${CMAKE_SOURCE_DIR}/data/points/bunny_5000.off") install(TARGETS Simplex_tree_example_alpha_shapes_3_from_off DESTINATION bin) diff --git a/utilities/Nerve_GIC/CMakeLists.txt b/utilities/Nerve_GIC/CMakeLists.txt index 215f9df..20aeb8e 100644 --- a/utilities/Nerve_GIC/CMakeLists.txt +++ b/utilities/Nerve_GIC/CMakeLists.txt @@ -11,14 +11,6 @@ if (NOT CGAL_VERSION VERSION_LESS 4.8.1) endif() file(COPY KeplerMapperVisuFromTxtFile.py km.py DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/) - # Copy files for not to pollute sources when testing - file(COPY "${CMAKE_SOURCE_DIR}/data/points/human.off" DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/) - - add_test(NAME Nerve_GIC_utilities_nerve COMMAND $ - "human.off" "2" "10" "0.3") - - add_test(NAME Nerve_GIC_utilities_VoronoiGIC COMMAND $ - "human.off" "100") install(TARGETS Nerve DESTINATION bin) install(TARGETS VoronoiGIC DESTINATION bin)