/* This file is part of the Gudhi Library. The Gudhi library * (Geometric Understanding in Higher Dimensions) is a generic C++ * library for computational topology. * * Author(s): Siargey Kachanovich * * Copyright (C) 2015 INRIA Sophia Antipolis-Méditerranée (France) * * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program. If not, see . */ #ifndef LANDMARK_CHOICE_BY_FURTHEST_POINT_H_ #define LANDMARK_CHOICE_BY_FURTHEST_POINT_H_ #include #include // for numeric_limits<> #include #include // for sort #include namespace Gudhi { namespace witness_complex { typedef std::vector typeVectorVertex; /** * \ingroup witness_complex * \brief Landmark choice strategy by iteratively adding the furthest witness from the * current landmark set as the new landmark. * \details It chooses nbL landmarks from a random access range `points` and * writes {witness}*{closest landmarks} matrix in `knn`. * * The type KNearestNeighbors can be seen as * Witness_range>, where * Witness_range and Closest_landmark_range are random access ranges * */ template void landmark_choice_by_furthest_point(Point_random_access_range const &points, int nbL, KNearestNeighbours &knn) { int nb_points = boost::size(points); assert(nb_points >= nbL); // distance matrix witness x landmarks std::vector> wit_land_dist(nb_points, std::vector()); // landmark list typeVectorVertex chosen_landmarks; knn = KNearestNeighbours(nb_points, std::vector()); int current_number_of_landmarks = 0; // counter for landmarks double curr_max_dist = 0; // used for defining the furhest point from L const double infty = std::numeric_limits::infinity(); // infinity (see next entry) std::vector< double > dist_to_L(nb_points, infty); // vector of current distances to L from points // TODO(SK) Consider using rand_r(...) instead of rand(...) for improved thread safety // or better yet std::uniform_int_distribution int rand_int = rand() % nb_points; int curr_max_w = rand_int; // For testing purposes a pseudo-random number is used here for (current_number_of_landmarks = 0; current_number_of_landmarks != nbL; current_number_of_landmarks++) { // curr_max_w at this point is the next landmark chosen_landmarks.push_back(curr_max_w); unsigned i = 0; for (auto& p : points) { double curr_dist = euclidean_distance(p, *(std::begin(points) + chosen_landmarks[current_number_of_landmarks])); wit_land_dist[i].push_back(curr_dist); knn[i].push_back(current_number_of_landmarks); if (curr_dist < dist_to_L[i]) dist_to_L[i] = curr_dist; ++i; } curr_max_dist = 0; for (i = 0; i < dist_to_L.size(); i++) if (dist_to_L[i] > curr_max_dist) { curr_max_dist = dist_to_L[i]; curr_max_w = i; } } for (int i = 0; i < nb_points; ++i) std::sort(std::begin(knn[i]), std::end(knn[i]), [&wit_land_dist, i](int a, int b) { return wit_land_dist[i][a] < wit_land_dist[i][b]; }); } } // namespace witness_complex } // namespace Gudhi #endif // LANDMARK_CHOICE_BY_FURTHEST_POINT_H_