/* This file is part of the Gudhi Library. The Gudhi library * (Geometric Understanding in Higher Dimensions) is a generic C++ * library for computational topology. * * Author(s): Siargey Kachanovich * * Copyright (C) 2015 INRIA Sophia Antipolis-Méditerranée (France) * * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program. If not, see . */ #ifndef LANDMARK_CHOICE_BY_RANDOM_POINT_H_ #define LANDMARK_CHOICE_BY_RANDOM_POINT_H_ #include #include // for priority_queue<> #include // for pair<> #include #include #include namespace Gudhi { namespace witness_complex { /** * \ingroup witness_complex * \brief Landmark choice strategy by taking random vertices for landmarks. * \details It chooses nbL distinct landmarks from a random access range `points` * and outputs a matrix {witness}*{closest landmarks} in knn. * * The type KNearestNeighbors can be seen as * Witness_range>, where * Witness_range and Closest_landmark_range are random access ranges and * Vertex_handle is the label type of a vertex in a simplicial complex. * Closest_landmark_range needs to have push_back operation. */ template void landmark_choice_by_random_point(Point_random_access_range const &points, int nbL, KNearestNeighbours &knn) { int nbP = boost::size(points); assert(nbP >= nbL); std::set landmarks; int current_number_of_landmarks = 0; // counter for landmarks // TODO(SK) Consider using rand_r(...) instead of rand(...) for improved thread safety int chosen_landmark = rand() % nbP; for (current_number_of_landmarks = 0; current_number_of_landmarks != nbL; current_number_of_landmarks++) { while (landmarks.find(chosen_landmark) != landmarks.end()) chosen_landmark = rand() % nbP; landmarks.insert(chosen_landmark); } int dim = boost::size(*std::begin(points)); typedef std::pair dist_i; typedef bool (*comp)(dist_i, dist_i); knn = KNearestNeighbours(nbP); for (int points_i = 0; points_i < nbP; points_i++) { std::priority_queue, comp> l_heap([](dist_i j1, dist_i j2) { return j1.first > j2.first; }); std::set::iterator landmarks_it; int landmarks_i = 0; for (landmarks_it = landmarks.begin(), landmarks_i = 0; landmarks_it != landmarks.end(); ++landmarks_it, landmarks_i++) { dist_i dist = std::make_pair(euclidean_distance(points[points_i], points[*landmarks_it]), landmarks_i); l_heap.push(dist); } for (int i = 0; i < dim + 1; i++) { dist_i dist = l_heap.top(); knn[points_i].push_back(dist.second); l_heap.pop(); } } } } // namespace witness_complex } // namespace Gudhi #endif // LANDMARK_CHOICE_BY_RANDOM_POINT_H_