/* This file is part of the Gudhi Library. The Gudhi library * (Geometric Understanding in Higher Dimensions) is a generic C++ * library for computational topology. * * Author(s): Pawel Dlotko * * Copyright (C) 2016 Inria * * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program. If not, see . */ #ifndef PSSK_H_ #define PSSK_H_ // gudhi include #include #include #include #include namespace Gudhi { namespace Persistence_representations { /** * This is a version of a representation presented in https://arxiv.org/abs/1412.6821 * In that paper the authors are using the representation just to compute kernel. Over here, we extend the usability by *far. * Note that the version presented here is not exact, since we are discretizing the kernel. * The only difference with respect to the original class is the method of creation. We have full (square) image, and for *every point (p,q), we add a kernel at (p,q) and the negative kernel * at (q,p) **/ class PSSK : public Persistence_heat_maps { public: PSSK() : Persistence_heat_maps() {} PSSK(const std::vector >& interval, std::vector > filter = create_Gaussian_filter(5, 1), size_t number_of_pixels = 1000, double min_ = -1, double max_ = -1) : Persistence_heat_maps() { this->construct(interval, filter, number_of_pixels, min_, max_); } PSSK(const char* filename, std::vector > filter = create_Gaussian_filter(5, 1), size_t number_of_pixels = 1000, double min_ = -1, double max_ = -1, unsigned dimension = std::numeric_limits::max()) : Persistence_heat_maps() { std::vector > intervals_; if (dimension == std::numeric_limits::max()) { intervals_ = read_persistence_intervals_in_one_dimension_from_file(filename); } else { intervals_ = read_persistence_intervals_in_one_dimension_from_file(filename, dimension); } this->construct(intervals_, filter, number_of_pixels, min_, max_); } protected: void construct(const std::vector >& intervals_, std::vector > filter = create_Gaussian_filter(5, 1), size_t number_of_pixels = 1000, double min_ = -1, double max_ = -1); }; // if min_ == max_, then the program is requested to set up the values itself based on persistence intervals void PSSK::construct(const std::vector >& intervals_, std::vector > filter, size_t number_of_pixels, double min_, double max_) { bool dbg = false; if (dbg) { std::cerr << "Entering construct procedure \n"; getchar(); } if (min_ == max_) { // in this case, we want the program to set up the min_ and max_ values by itself. min_ = std::numeric_limits::max(); max_ = -std::numeric_limits::max(); for (size_t i = 0; i != intervals_.size(); ++i) { if (intervals_[i].first < min_) min_ = intervals_[i].first; if (intervals_[i].second > max_) max_ = intervals_[i].second; } // now we have the structure filled in, and moreover we know min_ and max_ values of the interval, so we know the // range. // add some more space: min_ -= fabs(max_ - min_) / 100; max_ += fabs(max_ - min_) / 100; } if (dbg) { std::cerr << "min_ : " << min_ << std::endl; std::cerr << "max_ : " << max_ << std::endl; std::cerr << "number_of_pixels : " << number_of_pixels << std::endl; getchar(); } this->min_ = min_; this->max_ = max_; // initialization of the structure heat_map std::vector > heat_map_; for (size_t i = 0; i != number_of_pixels; ++i) { std::vector v(number_of_pixels, 0); heat_map_.push_back(v); } this->heat_map = heat_map_; if (dbg) std::cerr << "Done creating of the heat map, now we will fill in the structure \n"; for (size_t pt_nr = 0; pt_nr != intervals_.size(); ++pt_nr) { // compute the value of intervals_[pt_nr] in the grid: int x_grid = static_cast((intervals_[pt_nr].first - this->min_) / (this->max_ - this->min_) * number_of_pixels); int y_grid = static_cast((intervals_[pt_nr].second - this->min_) / (this->max_ - this->min_) * number_of_pixels); if (dbg) { std::cerr << "point : " << intervals_[pt_nr].first << " , " << intervals_[pt_nr].second << std::endl; std::cerr << "x_grid : " << x_grid << std::endl; std::cerr << "y_grid : " << y_grid << std::endl; } // x_grid and y_grid gives a center of the kernel. We want to have its lower left corner. To get this, we need to // shift x_grid and y_grid by a grid diameter. x_grid -= filter.size() / 2; y_grid -= filter.size() / 2; // note that the numbers x_grid and y_grid may be negative. if (dbg) { std::cerr << "After shift : \n"; std::cerr << "x_grid : " << x_grid << std::endl; std::cerr << "y_grid : " << y_grid << std::endl; std::cerr << "filter.size() : " << filter.size() << std::endl; getchar(); } for (size_t i = 0; i != filter.size(); ++i) { for (size_t j = 0; j != filter.size(); ++j) { // if the point (x_grid+i,y_grid+j) is the correct point in the grid. if (((x_grid + i) >= 0) && (x_grid + i < this->heat_map.size()) && ((y_grid + j) >= 0) && (y_grid + j < this->heat_map.size())) { if (dbg) { std::cerr << y_grid + j << " " << x_grid + i << std::endl; } this->heat_map[y_grid + j][x_grid + i] += filter[i][j]; this->heat_map[x_grid + i][y_grid + j] += -filter[i][j]; } } } } } // construct } // namespace Persistence_representations } // namespace Gudhi #endif // PSSK_H_