/* This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT. * See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details. * Author(s): Vincent Rouvreau * * Copyright (C) 2015 Inria * * Modification(s): * - YYYY/MM Author: Description of the modification */ #define BOOST_TEST_DYN_LINK #define BOOST_TEST_MODULE "alpha_complex_3d" #include #include #include // float comparison #include #include #include #include #include // for std::size_t #include #include #include #include // to construct Alpha_complex from a OFF file of points #include #include #include using Fast_weighted_alpha_complex_3d = Gudhi::alpha_complex::Alpha_complex_3d; using Safe_weighted_alpha_complex_3d = Gudhi::alpha_complex::Alpha_complex_3d; using Exact_weighted_alpha_complex_3d = Gudhi::alpha_complex::Alpha_complex_3d; typedef boost::mpl::list weighted_variants_type_list; #ifdef GUDHI_DEBUG BOOST_AUTO_TEST_CASE_TEMPLATE(Alpha_complex_weighted_throw, Weighted_alpha_complex_3d, weighted_variants_type_list) { using Bare_point_3 = typename Weighted_alpha_complex_3d::Bare_point_3; std::vector w_points; w_points.push_back(Bare_point_3(0.0, 0.0, 0.0)); w_points.push_back(Bare_point_3(0.0, 0.0, 0.2)); w_points.push_back(Bare_point_3(0.2, 0.0, 0.2)); // w_points.push_back(Bare_point_3(0.6, 0.6, 0.0)); // w_points.push_back(Bare_point_3(0.8, 0.8, 0.2)); // w_points.push_back(Bare_point_3(0.2, 0.8, 0.6)); // weights size is different from w_points size to make weighted Alpha_complex_3d throw in debug mode std::vector weights = {0.01, 0.005, 0.006, 0.01, 0.009, 0.001}; std::cout << "Check exception throw in debug mode" << std::endl; BOOST_CHECK_THROW(Weighted_alpha_complex_3d wac(w_points, weights), std::invalid_argument); } #endif BOOST_AUTO_TEST_CASE_TEMPLATE(Alpha_complex_weighted, Weighted_alpha_complex_3d, weighted_variants_type_list) { std::cout << "Weighted alpha complex 3d from points and weights" << std::endl; using Bare_point_3 = typename Weighted_alpha_complex_3d::Bare_point_3; std::vector w_points; w_points.push_back(Bare_point_3(0.0, 0.0, 0.0)); w_points.push_back(Bare_point_3(0.0, 0.0, 0.2)); w_points.push_back(Bare_point_3(0.2, 0.0, 0.2)); w_points.push_back(Bare_point_3(0.6, 0.6, 0.0)); w_points.push_back(Bare_point_3(0.8, 0.8, 0.2)); w_points.push_back(Bare_point_3(0.2, 0.8, 0.6)); // weights size is different from w_points size to make weighted Alpha_complex_3d throw in debug mode std::vector weights = {0.01, 0.005, 0.006, 0.01, 0.009, 0.001}; Weighted_alpha_complex_3d alpha_complex_p_a_w(w_points, weights); Gudhi::Simplex_tree<> stree; alpha_complex_p_a_w.create_complex(stree); std::cout << "Weighted alpha complex 3d from weighted points" << std::endl; using Weighted_point_3 = typename Weighted_alpha_complex_3d::Weighted_point_3; std::vector weighted_points; for (std::size_t i = 0; i < w_points.size(); i++) { weighted_points.push_back(Weighted_point_3(w_points[i], weights[i])); } Weighted_alpha_complex_3d alpha_complex_w_p(weighted_points); Gudhi::Simplex_tree<> stree_bis; alpha_complex_w_p.create_complex(stree_bis); for (std::size_t index = 0; index < weighted_points.size(); index++) { bool found = false; Weighted_point_3 awp = alpha_complex_w_p.get_point(index); for (auto weighted_point : weighted_points) { if ((weighted_point.weight() == awp.weight()) && (weighted_point.x() == awp.x()) && (weighted_point.y() == awp.y()) && (weighted_point.z() == awp.z())) { found = true; break; } } // Check all points from alpha complex are found in the input point cloud BOOST_CHECK(found); } // Exception if we go out of range BOOST_CHECK_THROW(alpha_complex_w_p.get_point(weighted_points.size()), std::out_of_range); // --------------------- // Compare both versions // --------------------- std::cout << "Weighted alpha complex 3d is of dimension " << stree_bis.dimension() << " - versus " << stree.dimension() << std::endl; BOOST_CHECK(stree_bis.dimension() == stree.dimension()); std::cout << "Weighted alpha complex 3d num_simplices " << stree_bis.num_simplices() << " - versus " << stree.num_simplices() << std::endl; BOOST_CHECK(stree_bis.num_simplices() == stree.num_simplices()); std::cout << "Weighted alpha complex 3d num_vertices " << stree_bis.num_vertices() << " - versus " << stree.num_vertices() << std::endl; BOOST_CHECK(stree_bis.num_vertices() == stree.num_vertices()); auto sh = stree.filtration_simplex_range().begin(); while (sh != stree.filtration_simplex_range().end()) { std::vector simplex; std::vector exact_simplex; #ifdef DEBUG_TRACES std::cout << " ( "; #endif for (auto vertex : stree.simplex_vertex_range(*sh)) { simplex.push_back(vertex); #ifdef DEBUG_TRACES std::cout << vertex << " "; #endif } #ifdef DEBUG_TRACES std::cout << ") -> " << "[" << stree.filtration(*sh) << "] "; std::cout << std::endl; #endif // Find it in the exact structure auto sh_exact = stree_bis.find(simplex); BOOST_CHECK(sh_exact != stree_bis.null_simplex()); // Exact and non-exact version is not exactly the same due to float comparison GUDHI_TEST_FLOAT_EQUALITY_CHECK(stree_bis.filtration(sh_exact), stree.filtration(*sh)); ++sh; } }