/* This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT. * See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details. * Author: Francois Godi * * Copyright (C) 2015 Inria * * Modification(s): * - YYYY/MM Author: Description of the modification */ #define BOOST_TEST_DYN_LINK #define BOOST_TEST_MODULE "bottleneck distance" #include #include #include #include using namespace Gudhi::persistence_diagram; int n1 = 81; // a natural number >0 int n2 = 180; // a natural number >0 double upper_bound = 406.43; // any real >0 std::uniform_real_distribution unif(0., upper_bound); std::default_random_engine re; std::vector< std::pair > v1, v2; BOOST_AUTO_TEST_CASE(persistence_graph) { // Random construction for (int i = 0; i < n1; i++) { double a = unif(re); double b = unif(re); v1.emplace_back(std::min(a, b), std::max(a, b)); } for (int i = 0; i < n2; i++) { double a = unif(re); double b = unif(re); v2.emplace_back(std::min(a, b), std::max(a, b)); } Persistence_graph g(v1, v2, 0.); std::vector d(g.sorted_distances()); // BOOST_CHECK(!g.on_the_u_diagonal(n1 - 1)); BOOST_CHECK(!g.on_the_u_diagonal(n1)); BOOST_CHECK(!g.on_the_u_diagonal(n2 - 1)); BOOST_CHECK(g.on_the_u_diagonal(n2)); BOOST_CHECK(!g.on_the_v_diagonal(n1 - 1)); BOOST_CHECK(g.on_the_v_diagonal(n1)); BOOST_CHECK(g.on_the_v_diagonal(n2 - 1)); BOOST_CHECK(g.on_the_v_diagonal(n2)); // BOOST_CHECK(g.corresponding_point_in_u(0) == n2); BOOST_CHECK(g.corresponding_point_in_u(n1) == 0); BOOST_CHECK(g.corresponding_point_in_v(0) == n1); BOOST_CHECK(g.corresponding_point_in_v(n2) == 0); // BOOST_CHECK(g.size() == (n1 + n2)); // BOOST_CHECK((int) d.size() == (n1 + n2)*(n1 + n2) + n1 + n2 + 1); BOOST_CHECK(std::count(d.begin(), d.end(), GUDHI_PROTECT_FLOAT(g.distance(0, 0))) > 0); BOOST_CHECK(std::count(d.begin(), d.end(), GUDHI_PROTECT_FLOAT(g.distance(0, n1 - 1))) > 0); BOOST_CHECK(std::count(d.begin(), d.end(), GUDHI_PROTECT_FLOAT(g.distance(0, n1))) > 0); BOOST_CHECK(std::count(d.begin(), d.end(), GUDHI_PROTECT_FLOAT(g.distance(0, n2 - 1))) > 0); BOOST_CHECK(std::count(d.begin(), d.end(), GUDHI_PROTECT_FLOAT(g.distance(0, n2))) > 0); BOOST_CHECK(std::count(d.begin(), d.end(), GUDHI_PROTECT_FLOAT(g.distance(0, (n1 + n2) - 1))) > 0); BOOST_CHECK(std::count(d.begin(), d.end(), GUDHI_PROTECT_FLOAT(g.distance(n1, 0))) > 0); BOOST_CHECK(std::count(d.begin(), d.end(), GUDHI_PROTECT_FLOAT(g.distance(n1, n1 - 1))) > 0); BOOST_CHECK(std::count(d.begin(), d.end(), GUDHI_PROTECT_FLOAT(g.distance(n1, n1))) > 0); BOOST_CHECK(std::count(d.begin(), d.end(), GUDHI_PROTECT_FLOAT(g.distance(n1, n2 - 1))) > 0); BOOST_CHECK(std::count(d.begin(), d.end(), GUDHI_PROTECT_FLOAT(g.distance(n1, n2))) > 0); BOOST_CHECK(std::count(d.begin(), d.end(), GUDHI_PROTECT_FLOAT(g.distance(n1, (n1 + n2) - 1))) > 0); BOOST_CHECK(std::count(d.begin(), d.end(), GUDHI_PROTECT_FLOAT(g.distance((n1 + n2) - 1, 0))) > 0); BOOST_CHECK(std::count(d.begin(), d.end(), GUDHI_PROTECT_FLOAT(g.distance((n1 + n2) - 1, n1 - 1))) > 0); BOOST_CHECK(std::count(d.begin(), d.end(), GUDHI_PROTECT_FLOAT(g.distance((n1 + n2) - 1, n1))) > 0); BOOST_CHECK(std::count(d.begin(), d.end(), GUDHI_PROTECT_FLOAT(g.distance((n1 + n2) - 1, n2 - 1))) > 0); BOOST_CHECK(std::count(d.begin(), d.end(), GUDHI_PROTECT_FLOAT(g.distance((n1 + n2) - 1, n2))) > 0); BOOST_CHECK(std::count(d.begin(), d.end(), GUDHI_PROTECT_FLOAT(g.distance((n1 + n2) - 1, (n1 + n2) - 1))) > 0); } BOOST_AUTO_TEST_CASE(neighbors_finder) { Persistence_graph g(v1, v2, 0.); Neighbors_finder nf(g, 1.); for (int v_point_index = 1; v_point_index < ((n2 + n1)*9 / 10); v_point_index += 2) nf.add(v_point_index); // int v_point_index_1 = nf.pull_near(n2 / 2); BOOST_CHECK((v_point_index_1 == -1) || (g.distance(n2 / 2, v_point_index_1) <= 1.)); std::vector l = nf.pull_all_near(n2 / 2); bool v = true; for (auto it = l.cbegin(); it != l.cend(); ++it) v = v && (g.distance(n2 / 2, *it) > 1.); BOOST_CHECK(v); int v_point_index_2 = nf.pull_near(n2 / 2); BOOST_CHECK(v_point_index_2 == -1); } BOOST_AUTO_TEST_CASE(layered_neighbors_finder) { Persistence_graph g(v1, v2, 0.); Layered_neighbors_finder lnf(g, 1.); for (int v_point_index = 1; v_point_index < ((n2 + n1)*9 / 10); v_point_index += 2) lnf.add(v_point_index, v_point_index % 7); // int v_point_index_1 = lnf.pull_near(n2 / 2, 6); BOOST_CHECK((v_point_index_1 == -1) || (g.distance(n2 / 2, v_point_index_1) <= 1.)); int v_point_index_2 = lnf.pull_near(n2 / 2, 6); BOOST_CHECK(v_point_index_2 == -1); v_point_index_1 = lnf.pull_near(n2 / 2, 0); BOOST_CHECK((v_point_index_1 == -1) || (g.distance(n2 / 2, v_point_index_1) <= 1.)); v_point_index_2 = lnf.pull_near(n2 / 2, 0); BOOST_CHECK(v_point_index_2 == -1); } BOOST_AUTO_TEST_CASE(graph_matching) { Persistence_graph g(v1, v2, 0.); Graph_matching m1(g); m1.set_r(0.); int e = 0; while (m1.multi_augment()) ++e; BOOST_CHECK(e > 0); BOOST_CHECK(e <= 2 * sqrt(2 * (n1 + n2))); Graph_matching m2 = m1; BOOST_CHECK(!m2.multi_augment()); m2.set_r(upper_bound); e = 0; while (m2.multi_augment()) ++e; BOOST_CHECK(e <= 2 * sqrt(2 * (n1 + n2))); BOOST_CHECK(m2.perfect()); BOOST_CHECK(!m1.perfect()); } BOOST_AUTO_TEST_CASE(global) { std::uniform_real_distribution unif1(0., upper_bound); std::uniform_real_distribution unif2(upper_bound / 10000., upper_bound / 100.); std::default_random_engine re; std::vector< std::pair > v1, v2; for (int i = 0; i < n1; i++) { double a = unif1(re); double b = unif1(re); double x = unif2(re); double y = unif2(re); v1.emplace_back(std::min(a, b), std::max(a, b)); v2.emplace_back(std::min(a, b) + std::min(x, y), std::max(a, b) + std::max(x, y)); if (i % 5 == 0) v1.emplace_back(std::min(a, b), std::min(a, b) + x); if (i % 3 == 0) v2.emplace_back(std::max(a, b), std::max(a, b) + y); } BOOST_CHECK(bottleneck_distance(v1, v2, 0.) <= upper_bound / 100.); BOOST_CHECK(bottleneck_distance(v1, v2, upper_bound / 10000.) <= upper_bound / 100. + upper_bound / 10000.); BOOST_CHECK(std::abs(bottleneck_distance(v1, v2, 0.) - bottleneck_distance(v1, v2, upper_bound / 10000.)) <= upper_bound / 10000.); std::vector< std::pair > empty; std::vector< std::pair > one = {{8, 10}}; BOOST_CHECK(bottleneck_distance(empty, empty) == 0); BOOST_CHECK(bottleneck_distance(empty, one) == 1); }