/* This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT. * See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details. * Author(s): Vincent Rouvreau * * Copyright (C) 2020 Inria * * Modification(s): * - YYYY/MM Author: Description of the modification */ #define BOOST_TEST_DYN_LINK #define BOOST_TEST_MODULE "collapse" #include #include #include #include #include #include #include #include #include #include #include struct Simplicial_complex { using Vertex_handle = short; using Filtration_value = float; }; using Vertex_handle = Simplicial_complex::Vertex_handle; using Filtration_value = Simplicial_complex::Filtration_value; using Filtered_edge = std::tuple; using Filtered_edge_list = std::vector; template bool find_edge_in_list(const Filtered_edge& edge, const Filtered_edge_range& edge_list) { for (auto edge_from_list : edge_list) { if (edge_from_list == edge) return true; } return false; } template void trace_and_check_collapse(const Filtered_edge_range& filtered_edges, const Filtered_edge_list& removed_edges) { std::cout << "BEFORE COLLAPSE - Total number of edges: " << filtered_edges.size() << std::endl; BOOST_CHECK(filtered_edges.size() > 0); for (auto filtered_edge : filtered_edges) { std::cout << "f[" << std::get<0>(filtered_edge) << ", " << std::get<1>(filtered_edge) << "] = " << std::get<2>(filtered_edge) << std::endl; } std::cout << "COLLAPSE - keep edges: " << std::endl; auto remaining_edges = Gudhi::collapse::flag_complex_collapse_edges(filtered_edges); std::cout << "AFTER COLLAPSE - Total number of edges: " << remaining_edges.size() << std::endl; BOOST_CHECK(remaining_edges.size() <= filtered_edges.size()); for (auto filtered_edge_from_collapse : remaining_edges) { std::cout << "f[" << std::get<0>(filtered_edge_from_collapse) << ", " << std::get<1>(filtered_edge_from_collapse) << "] = " << std::get<2>(filtered_edge_from_collapse) << std::endl; // Check each edge from collapse is in the input BOOST_CHECK(find_edge_in_list(filtered_edge_from_collapse, filtered_edges)); } std::cout << "CHECK COLLAPSE - Total number of removed edges: " << removed_edges.size() << std::endl; for (auto removed_filtered_edge : removed_edges) { std::cout << "f[" << std::get<0>(removed_filtered_edge) << ", " << std::get<1>(removed_filtered_edge) << "] = " << std::get<2>(removed_filtered_edge) << std::endl; // Check each removed edge from collapse is in the input BOOST_CHECK(!find_edge_in_list(removed_filtered_edge, remaining_edges)); } } BOOST_AUTO_TEST_CASE(collapse) { std::cout << "***** COLLAPSE *****" << std::endl; // 1 2 // o---o // | | // | | // | | // o---o // 0 3 Filtered_edge_list edges {{0, 1, 1.}, {1, 2, 1.}, {2, 3, 1.}, {3, 0, 1.}}; trace_and_check_collapse(edges, {}); // 1 2 // o---o // |\ /| // | x | // |/ \| // o---o // 0 3 edges.emplace_back(0, 2, 2.); edges.emplace_back(1, 3, 2.); trace_and_check_collapse(edges, {{1, 3, 2.}}); // 1 2 4 // o---o---o // |\ /| | // | x | | // |/ \| | // o---o---o // 0 3 5 edges.emplace_back(2, 4, 3.); edges.emplace_back(4, 5, 3.); edges.emplace_back(5, 3, 3.); trace_and_check_collapse(edges, {{1, 3, 2.}}); // 1 2 4 // o---o---o // |\ /|\ /| // | x | x | // |/ \|/ \| // o---o---o // 0 3 5 edges.emplace_back(2, 5, 4.); edges.emplace_back(4, 3, 4.); trace_and_check_collapse(edges, {{1, 3, 2.}, {4, 3, 4.}}); // 1 2 4 // o---o---o // |\ /|\ /| // | x | x | + [0,4] and [1,5] // |/ \|/ \| // o---o---o // 0 3 5 edges.emplace_back(1, 5, 5.); edges.emplace_back(0, 4, 5.); trace_and_check_collapse(edges, {{1, 3, 2.}, {4, 3, 4.}, {0, 4, 5.}}); } BOOST_AUTO_TEST_CASE(collapse_from_array) { std::cout << "***** COLLAPSE FROM ARRAY *****" << std::endl; // 1 2 // o---o // |\ /| // | x | // |/ \| // o---o // 0 3 std::array f_edge_array = {{{0, 1, 1.}, {1, 2, 1.}, {2, 3, 1.}, {3, 0, 1.}, {0, 2, 2.}, {1, 3, 2.}}}; trace_and_check_collapse(f_edge_array, {{1, 3, 2.}}); } BOOST_AUTO_TEST_CASE(collapse_from_proximity_graph) { std::cout << "***** COLLAPSE FROM PROXIMITY GRAPH *****" << std::endl; // 1 2 // o---o // |\ /| // | x | // |/ \| // o---o // 0 3 std::vector> point_cloud = {{0., 0.}, {0., 1.}, {1., 0.}, {1., 1.} }; Filtration_value threshold = std::numeric_limits::infinity(); using Proximity_graph = Gudhi::Proximity_graph; Proximity_graph proximity_graph = Gudhi::compute_proximity_graph(point_cloud, threshold, Gudhi::Euclidean_distance()); auto remaining_edges = Gudhi::collapse::flag_complex_collapse_edges( boost::adaptors::transform(edges(proximity_graph), [&](auto&&edge){ return std::make_tuple(static_cast(source(edge, proximity_graph)), static_cast(target(edge, proximity_graph)), get(Gudhi::edge_filtration_t(), proximity_graph, edge)); }) ); BOOST_CHECK(remaining_edges.size() == 5); std::size_t filtration_is_edge_length_nb = 0; std::size_t filtration_is_diagonal_length_nb = 0; float epsilon = std::numeric_limits::epsilon(); for (auto filtered_edge : remaining_edges) { if (std::get<2>(filtered_edge) == 1.) filtration_is_edge_length_nb++; if (std::fabs(std::get<2>(filtered_edge) - std::sqrt(2.)) <= epsilon) filtration_is_diagonal_length_nb++; } BOOST_CHECK(filtration_is_edge_length_nb == 4); BOOST_CHECK(filtration_is_diagonal_length_nb == 1); }