/* This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT. * See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details. * Author(s): Pawel Dlotko and Mathieu Carriere * * Copyright (C) 2019 Inria * * Modifications: * - 2018/04 MC: Add persistence heat maps computation * * Modification(s): * - YYYY/MM Author: Description of the modification */ #include #include #include #include #include #include #include std::function, std::pair)> Gaussian_function(double sigma) { return [=](std::pair p, std::pair q) { return std::exp(-((p.first - q.first) * (p.first - q.first) + (p.second - q.second) * (p.second - q.second)) / (sigma)); }; } using constant_scaling_function = Gudhi::Persistence_representations::constant_scaling_function; using Persistence_heat_maps = Gudhi::Persistence_representations::Persistence_heat_maps; int main(int argc, char** argv) { // create two simple vectors with birth--death pairs: std::vector > persistence1; std::vector > persistence2; persistence1.push_back(std::make_pair(1, 2)); persistence1.push_back(std::make_pair(6, 8)); persistence1.push_back(std::make_pair(0, 4)); persistence1.push_back(std::make_pair(3, 8)); persistence2.push_back(std::make_pair(2, 9)); persistence2.push_back(std::make_pair(1, 6)); persistence2.push_back(std::make_pair(3, 5)); persistence2.push_back(std::make_pair(6, 10)); // over here we define a function we sill put on a top on every birth--death pair in the persistence interval. It can // be anything. Over here we will use standard Gaussian std::vector > filter = Gudhi::Persistence_representations::create_Gaussian_filter(5, 1); // creating two heat maps. Persistence_heat_maps hm1(persistence1, filter, false, 20, 0, 11); Persistence_heat_maps hm2(persistence2, filter, false, 20, 0, 11); std::vector vector_of_maps; vector_of_maps.push_back(&hm1); vector_of_maps.push_back(&hm2); // compute median/mean of a vector of heat maps: Persistence_heat_maps mean; mean.compute_mean(vector_of_maps); Persistence_heat_maps median; median.compute_median(vector_of_maps); // to compute L^1 distance between hm1 and hm2: std::cout << "The L^1 distance is : " << hm1.distance(hm2, 1) << std::endl; // to average of hm1 and hm2: std::vector to_average; to_average.push_back(&hm1); to_average.push_back(&hm2); Persistence_heat_maps av; av.compute_average(to_average); // to compute scalar product of hm1 and hm2: std::cout << "Scalar product is : " << hm1.compute_scalar_product(hm2) << std::endl; Persistence_heat_maps hm1k(persistence1, Gaussian_function(1.0)); Persistence_heat_maps hm2k(persistence2, Gaussian_function(1.0)); Persistence_heat_maps hm1i(persistence1, Gaussian_function(1.0), 20, 20, 0, 11, 0, 11); Persistence_heat_maps hm2i(persistence2, Gaussian_function(1.0), 20, 20, 0, 11, 0, 11); std::cout << "Scalar product computed with exact 2D kernel on grid is : " << hm1i.compute_scalar_product(hm2i) << std::endl; std::cout << "Scalar product computed with exact 2D kernel is : " << hm1k.compute_scalar_product(hm2k) << std::endl; return 0; }