# This files manage third party libraries required by GUDHI find_package(Boost 1.56.0 REQUIRED COMPONENTS system filesystem unit_test_framework program_options thread) if(NOT Boost_FOUND) message(FATAL_ERROR "NOTICE: This program requires Boost and will not be compiled.") endif(NOT Boost_FOUND) # cf. https://cliutils.gitlab.io/modern-cmake/chapters/packages/Boost.html # This is needed if your Boost version is newer than your CMake version # or if you have an old version of CMake (<3.5) if(NOT TARGET Boost::program_options) add_library(Boost::program_options IMPORTED INTERFACE) set_property(TARGET Boost::program_options PROPERTY INTERFACE_INCLUDE_DIRECTORIES ${Boost_INCLUDE_DIR}) set_property(TARGET Boost::program_options PROPERTY INTERFACE_LINK_LIBRARIES ${Boost_LIBRARIES}) endif() if(NOT TARGET Boost::filesystem) add_library(Boost::filesystem IMPORTED INTERFACE) set_property(TARGET Boost::filesystem PROPERTY INTERFACE_INCLUDE_DIRECTORIES ${Boost_INCLUDE_DIR}) set_property(TARGET Boost::filesystem PROPERTY INTERFACE_LINK_LIBRARIES ${Boost_LIBRARIES}) endif() if(NOT TARGET Boost::unit_test_framework) add_library(Boost::unit_test_framework IMPORTED INTERFACE) set_property(TARGET Boost::unit_test_framework PROPERTY INTERFACE_INCLUDE_DIRECTORIES ${Boost_INCLUDE_DIR}) set_property(TARGET Boost::unit_test_framework PROPERTY INTERFACE_LINK_LIBRARIES ${Boost_LIBRARIES}) endif() if(NOT TARGET Boost::system) add_library(Boost::system IMPORTED INTERFACE) set_property(TARGET Boost::system PROPERTY INTERFACE_INCLUDE_DIRECTORIES ${Boost_INCLUDE_DIR}) set_property(TARGET Boost::system PROPERTY INTERFACE_LINK_LIBRARIES ${Boost_LIBRARIES}) endif() find_package(GMP) if(GMP_FOUND) INCLUDE_DIRECTORIES(${GMP_INCLUDE_DIR}) find_package(GMPXX) if(GMPXX_FOUND) INCLUDE_DIRECTORIES(${GMPXX_INCLUDE_DIR}) endif() endif() # In CMakeLists.txt, when include(${CGAL_USE_FILE}), CMAKE_CXX_FLAGS are overwritten. # cf. http://doc.cgal.org/latest/Manual/installation.html#title40 # A workaround is to include(${CGAL_USE_FILE}) before adding "-std=c++11". # A fix would be to use https://cmake.org/cmake/help/v3.1/prop_gbl/CMAKE_CXX_KNOWN_FEATURES.html # or even better https://cmake.org/cmake/help/v3.1/variable/CMAKE_CXX_STANDARD.html # but it implies to use cmake version 3.1 at least. find_package(CGAL QUIET) # Only CGAL versions > 4.11 supports what Gudhi uses from CGAL if (CGAL_FOUND AND CGAL_VERSION VERSION_LESS 4.11.0) message("++ CGAL version ${CGAL_VERSION} is considered too old to be used by Gudhi.") unset(CGAL_FOUND) unset(CGAL_VERSION) endif() if(CGAL_FOUND) message(STATUS "CGAL version: ${CGAL_VERSION}.") include( ${CGAL_USE_FILE} ) endif() # For those who dislike bundled dependencies, this indicates where to find a preinstalled Hera. set(HERA_WASSERSTEIN_INTERNAL_INCLUDE_DIR ${CMAKE_SOURCE_DIR}/ext/hera/wasserstein/include) set(HERA_WASSERSTEIN_INCLUDE_DIR ${HERA_WASSERSTEIN_INTERNAL_INCLUDE_DIR} CACHE PATH "Directory where one can find Hera's wasserstein.h") set(HERA_BOTTLENECK_INTERNAL_INCLUDE_DIR ${CMAKE_SOURCE_DIR}/ext/hera/bottleneck/include) set(HERA_BOTTLENECK_INCLUDE_DIR ${HERA_BOTTLENECK_INTERNAL_INCLUDE_DIR} CACHE PATH "Directory where one can find Hera's bottleneck.h") option(WITH_GUDHI_USE_TBB "Build with Intel TBB parallelization" ON) # Find TBB package for parallel sort - not mandatory, just optional. if(WITH_GUDHI_USE_TBB) set(TBB_FIND_QUIETLY ON) find_package(TBB) if (TBB_FOUND) include(${TBB_USE_FILE}) message("TBB found in ${TBB_LIBRARY_DIRS}") add_definitions(-DGUDHI_USE_TBB) endif() endif(WITH_GUDHI_USE_TBB) set(CGAL_WITH_EIGEN3_VERSION 0.0.0) find_package(Eigen3 3.1.0) if (EIGEN3_FOUND) include( ${EIGEN3_USE_FILE} ) set(CGAL_WITH_EIGEN3_VERSION ${CGAL_VERSION}) endif (EIGEN3_FOUND) # Required programs for unitary tests purpose FIND_PROGRAM( GCOVR_PATH gcovr ) if (GCOVR_PATH) message("gcovr found in ${GCOVR_PATH}") endif() FIND_PROGRAM( GPROF_PATH gprof ) if (GPROF_PATH) message("gprof found in ${GPROF_PATH}") endif() FIND_PROGRAM( DIFF_PATH diff ) if (DIFF_PATH) message("diff found in ${DIFF_PATH}") endif() FIND_PROGRAM( GNUPLOT_PATH gnuplot ) if (GNUPLOT_PATH) message("gnuplot found in ${GNUPLOT_PATH}") endif() # BOOST ISSUE result_of vs C++11 add_definitions(-DBOOST_RESULT_OF_USE_DECLTYPE) # BOOST ISSUE with Libraries name resolution under Windows add_definitions(-DBOOST_ALL_NO_LIB) # problem with Visual Studio link on Boost program_options add_definitions( -DBOOST_ALL_DYN_LINK ) # problem on Mac with boost_system and boost_thread add_definitions( -DBOOST_SYSTEM_NO_DEPRECATED ) message(STATUS "boost include dirs:" ${Boost_INCLUDE_DIRS}) message(STATUS "boost library dirs:" ${Boost_LIBRARY_DIRS}) # Find the correct Python interpreter. # Can be set with -DPYTHON_EXECUTABLE=/usr/bin/python3 or -DPython_ADDITIONAL_VERSIONS=3 for instance. find_package( PythonInterp ) # find_python_module tries to import module in Python interpreter and to retrieve its version number # returns ${PYTHON_MODULE_NAME_UP}_VERSION and ${PYTHON_MODULE_NAME_UP}_FOUND function( find_python_module PYTHON_MODULE_NAME ) string(TOUPPER ${PYTHON_MODULE_NAME} PYTHON_MODULE_NAME_UP) execute_process( COMMAND ${PYTHON_EXECUTABLE} -c "import ${PYTHON_MODULE_NAME}; print(${PYTHON_MODULE_NAME}.__version__)" RESULT_VARIABLE PYTHON_MODULE_RESULT OUTPUT_VARIABLE PYTHON_MODULE_VERSION ERROR_VARIABLE PYTHON_MODULE_ERROR) if(PYTHON_MODULE_RESULT EQUAL 0) # Remove carriage return string(STRIP ${PYTHON_MODULE_VERSION} PYTHON_MODULE_VERSION) message ("++ Python module ${PYTHON_MODULE_NAME} - Version ${PYTHON_MODULE_VERSION} found") set(${PYTHON_MODULE_NAME_UP}_VERSION ${PYTHON_MODULE_VERSION} PARENT_SCOPE) set(${PYTHON_MODULE_NAME_UP}_FOUND TRUE PARENT_SCOPE) else() message ("PYTHON_MODULE_NAME = ${PYTHON_MODULE_NAME} - PYTHON_MODULE_RESULT = ${PYTHON_MODULE_RESULT} - PYTHON_MODULE_VERSION = ${PYTHON_MODULE_VERSION} - PYTHON_MODULE_ERROR = ${PYTHON_MODULE_ERROR}") unset(${PYTHON_MODULE_NAME_UP}_VERSION PARENT_SCOPE) set(${PYTHON_MODULE_NAME_UP}_FOUND FALSE PARENT_SCOPE) endif() endfunction( find_python_module ) # For modules that do not define module.__version__ function( find_python_module_no_version PYTHON_MODULE_NAME ) string(TOUPPER ${PYTHON_MODULE_NAME} PYTHON_MODULE_NAME_UP) execute_process( COMMAND ${PYTHON_EXECUTABLE} -c "import ${PYTHON_MODULE_NAME}" RESULT_VARIABLE PYTHON_MODULE_RESULT ERROR_VARIABLE PYTHON_MODULE_ERROR) if(PYTHON_MODULE_RESULT EQUAL 0) # Remove carriage return message ("++ Python module ${PYTHON_MODULE_NAME} found") set(${PYTHON_MODULE_NAME_UP}_FOUND TRUE PARENT_SCOPE) else() message ("PYTHON_MODULE_NAME = ${PYTHON_MODULE_NAME} - PYTHON_MODULE_RESULT = ${PYTHON_MODULE_RESULT} - PYTHON_MODULE_ERROR = ${PYTHON_MODULE_ERROR}") set(${PYTHON_MODULE_NAME_UP}_FOUND FALSE PARENT_SCOPE) endif() endfunction( find_python_module_no_version ) if( PYTHONINTERP_FOUND ) find_python_module("cython") find_python_module("pytest") find_python_module("matplotlib") find_python_module("numpy") find_python_module("scipy") find_python_module("sphinx") find_python_module("sklearn") find_python_module("ot") find_python_module("pybind11") find_python_module("torch") find_python_module("pykeops") find_python_module("eagerpy") find_python_module_no_version("hnswlib") endif() if(NOT GUDHI_PYTHON_PATH) message(FATAL_ERROR "ERROR: GUDHI_PYTHON_PATH is not valid.") endif(NOT GUDHI_PYTHON_PATH) option(WITH_GUDHI_PYTHON_RUNTIME_LIBRARY_DIRS "Build with setting runtime_library_dirs. Usefull when setting rpath is not allowed" ON) if(PYTHONINTERP_FOUND AND CYTHON_FOUND) if(SPHINX_FOUND) # Documentation generation is available through sphinx find_program( SPHINX_PATH sphinx-build ) if(NOT SPHINX_PATH) if(PYTHON_VERSION_MAJOR EQUAL 3) # In Python3, just hack sphinx-build if it does not exist set(SPHINX_PATH "${PYTHON_EXECUTABLE}" "-m" "sphinx.cmd.build") endif(PYTHON_VERSION_MAJOR EQUAL 3) endif(NOT SPHINX_PATH) endif(SPHINX_FOUND) endif(PYTHONINTERP_FOUND AND CYTHON_FOUND)