from gudhi import CubicalComplex, PeriodicCubicalComplex import numpy as np """ This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT. See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details. Author(s): Vincent Rouvreau Copyright (C) 2016 Inria Modification(s): - YYYY/MM Author: Description of the modification """ __author__ = "Vincent Rouvreau" __copyright__ = "Copyright (C) 2016 Inria" __license__ = "MIT" def test_empty_constructor(): # Try to create an empty CubicalComplex cub = CubicalComplex() assert cub.__is_defined() == False assert cub.__is_persistence_defined() == False def test_non_existing_perseus_file_constructor(): # Try to open a non existing file cub = CubicalComplex(perseus_file="pouetpouettralala.toubiloubabdou") assert cub.__is_defined() == False assert cub.__is_persistence_defined() == False def test_dimension_or_perseus_file_constructor(): # Create test file test_file = open("CubicalOneSphere.txt", "w") test_file.write("2\n3\n3\n0\n0\n0\n0\n100\n0\n0\n0\n0\n") test_file.close() # CubicalComplex can be constructed from dimensions and # top_dimensional_cells OR from a Perseus-style file name. cub = CubicalComplex( dimensions=[3, 3], top_dimensional_cells=[1, 2, 3, 4, 5, 6, 7, 8, 9], perseus_file="CubicalOneSphere.txt", ) assert cub.__is_defined() == False assert cub.__is_persistence_defined() == False cub = CubicalComplex( top_dimensional_cells=[1, 2, 3, 4, 5, 6, 7, 8, 9], perseus_file="CubicalOneSphere.txt", ) assert cub.__is_defined() == False assert cub.__is_persistence_defined() == False cub = CubicalComplex(dimensions=[3, 3], perseus_file="CubicalOneSphere.txt") assert cub.__is_defined() == False assert cub.__is_persistence_defined() == False def simple_constructor(cub): cub = CubicalComplex( dimensions=[3, 3], top_dimensional_cells=[1, 2, 3, 4, 5, 6, 7, 8, 9] ) assert cub.__is_defined() == True assert cub.__is_persistence_defined() == False assert cub.persistence() == [(0, (1.0, float("inf")))] assert cub.__is_persistence_defined() == True assert cub.betti_numbers() == [1, 0, 0] assert cub.persistent_betti_numbers(0, 1000) == [0, 0, 0] def test_simple_constructor_from_top_cells(): cub = CubicalComplex( dimensions=[3, 3], top_dimensional_cells=[1, 2, 3, 4, 5, 6, 7, 8, 9], ) simple_constructor(cub) def test_simple_constructor_from_numpy_array(): cub = CubicalComplex( top_dimensional_cells=np.array([[1, 2, 3], [4, 5, 6], [7, 8, 9]]) ) simple_constructor(cub) def user_case_simple_constructor(cub): assert cub.__is_defined() == True assert cub.__is_persistence_defined() == False assert cub.persistence() == [(1, (0.0, 1.0)), (0, (0.0, float("inf")))] assert cub.__is_persistence_defined() == True other_cub = CubicalComplex( dimensions=[3, 3], top_dimensional_cells=[1000.0, 0.0, 0.0, 0.0, 1.0, 0.0, 0.0, 0.0, 0.0], ) assert other_cub.persistence() == [(1, (0.0, 1.0)), (0, (0.0, float("inf")))] def test_user_case_simple_constructor_from_top_cells(): cub = CubicalComplex( dimensions=[3, 3], top_dimensional_cells=[float("inf"), 0.0, 0.0, 0.0, 1.0, 0.0, 0.0, 0.0, 0.0], ) user_case_simple_constructor(cub) def test_user_case_simple_constructor_from_numpy_array(): cub = CubicalComplex( top_dimensional_cells=np.array([[float("inf"), 0.0, 0.0], [0.0, 1.0, 0.0], [0.0, 0.0, 0.0]]) ) user_case_simple_constructor(cub) def test_dimension_file_constructor(): # Create test file test_file = open("CubicalOneSphere.txt", "w") test_file.write("2\n3\n3\n0\n0\n0\n0\n100\n0\n0\n0\n0\n") test_file.close() cub = CubicalComplex(perseus_file="CubicalOneSphere.txt") assert cub.__is_defined() == True assert cub.__is_persistence_defined() == False assert cub.persistence() == [(1, (0.0, 100.0)), (0, (0.0, float("inf")))] assert cub.__is_persistence_defined() == True assert cub.betti_numbers() == [1, 0, 0] assert cub.persistent_betti_numbers(0, 1000) == [1, 0, 0] def test_connected_sublevel_sets(): array_cells = np.array([[3, 3], [2, 2], [4, 4]]) linear_cells = [3, 3, 2, 2, 4, 4] dimensions = [2, 3] periodic_dimensions = [False, False] # with a numpy array version cub = CubicalComplex(top_dimensional_cells = array_cells) assert cub.persistence() == [(0, (2.0, float("inf")))] assert cub.betti_numbers() == [1, 0, 0] # with vector of dimensions cub = CubicalComplex(dimensions = dimensions, top_dimensional_cells = linear_cells) assert cub.persistence() == [(0, (2.0, float("inf")))] assert cub.betti_numbers() == [1, 0, 0] # periodic with a numpy array version cub = PeriodicCubicalComplex(top_dimensional_cells = array_cells, periodic_dimensions = periodic_dimensions) assert cub.persistence() == [(0, (2.0, float("inf")))] assert cub.betti_numbers() == [1, 0, 0] # periodic with vector of dimensions cub = PeriodicCubicalComplex(dimensions = dimensions, top_dimensional_cells = linear_cells, periodic_dimensions = periodic_dimensions) assert cub.persistence() == [(0, (2.0, float("inf")))] assert cub.betti_numbers() == [1, 0, 0]