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path: root/debian/patches/0001-Disable-tests-that-use-DFSG-deleted-data-files.patch
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From: Gard Spreemann <gspr@nonempty.org>
Date: Wed, 25 Sep 2019 15:12:45 +0200
Subject: Disable tests that use DFSG-deleted data files.

---
 src/Nerve_GIC/example/CMakeLists.txt             |  5 ----
 src/Nerve_GIC/utilities/CMakeLists.txt           |  8 ------
 src/Persistent_cohomology/example/CMakeLists.txt |  4 ---
 src/Simplex_tree/example/CMakeLists.txt          |  2 --
 src/python/CMakeLists.txt                        | 31 +-----------------------
 5 files changed, 1 insertion(+), 49 deletions(-)

diff --git a/src/Nerve_GIC/example/CMakeLists.txt b/src/Nerve_GIC/example/CMakeLists.txt
index 1667472..37c4759 100644
--- a/src/Nerve_GIC/example/CMakeLists.txt
+++ b/src/Nerve_GIC/example/CMakeLists.txt
@@ -12,15 +12,10 @@ if (NOT CGAL_VERSION VERSION_LESS 4.11.0)
 
   # Copy files for not to pollute sources when testing
   file(COPY "${CMAKE_SOURCE_DIR}/data/points/tore3D_1307.off" DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/)
-  file(COPY "${CMAKE_SOURCE_DIR}/data/points/COIL_database/lucky_cat.off" DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/)
-  file(COPY "${CMAKE_SOURCE_DIR}/data/points/COIL_database/lucky_cat_PCA1" DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/)
 
   add_test(NAME Nerve_GIC_example_CoordGIC COMMAND $<TARGET_FILE:CoordGIC>
       "${CMAKE_CURRENT_BINARY_DIR}/tore3D_1307.off" "0")
 
-  add_test(NAME Nerve_GIC_example_FuncGIC COMMAND $<TARGET_FILE:FuncGIC>
-      "${CMAKE_CURRENT_BINARY_DIR}/lucky_cat.off"
-      "${CMAKE_CURRENT_BINARY_DIR}/lucky_cat_PCA1")
 
   install(TARGETS CoordGIC DESTINATION bin)
   install(TARGETS FuncGIC DESTINATION bin)
diff --git a/src/Nerve_GIC/utilities/CMakeLists.txt b/src/Nerve_GIC/utilities/CMakeLists.txt
index 65a08d9..3f16db9 100644
--- a/src/Nerve_GIC/utilities/CMakeLists.txt
+++ b/src/Nerve_GIC/utilities/CMakeLists.txt
@@ -11,14 +11,6 @@ if (NOT CGAL_VERSION VERSION_LESS 4.11.0)
   endif()
 
   file(COPY KeplerMapperVisuFromTxtFile.py km.py DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/)
-  # Copy files for not to pollute sources when testing
-  file(COPY "${CMAKE_SOURCE_DIR}/data/points/human.off" DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/)
-
-  add_test(NAME Nerve_GIC_utilities_nerve COMMAND $<TARGET_FILE:Nerve>
-      "human.off" "2" "10" "0.3")
-
-  add_test(NAME Nerve_GIC_utilities_VoronoiGIC COMMAND $<TARGET_FILE:VoronoiGIC>
-      "human.off" "100")
 
   install(TARGETS Nerve DESTINATION bin)
   install(TARGETS VoronoiGIC DESTINATION bin)
diff --git a/src/Persistent_cohomology/example/CMakeLists.txt b/src/Persistent_cohomology/example/CMakeLists.txt
index 94ec13c..4a48d21 100644
--- a/src/Persistent_cohomology/example/CMakeLists.txt
+++ b/src/Persistent_cohomology/example/CMakeLists.txt
@@ -28,10 +28,6 @@ add_test(NAME Persistent_cohomology_example_from_rips_step_by_step_on_tore_3D CO
     "${CMAKE_SOURCE_DIR}/data/points/tore3D_1307.off" "-r" "0.25" "-m" "0.5" "-d" "3" "-p" "3")
 add_test(NAME Persistent_cohomology_example_via_boundary_matrix COMMAND $<TARGET_FILE:rips_persistence_via_boundary_matrix>
     "${CMAKE_SOURCE_DIR}/data/points/Kl.off" "-r" "0.16" "-d" "3" "-p" "3" "-m" "100")
-add_test(NAME Persistent_cohomology_example_from_file_3_2_0 COMMAND $<TARGET_FILE:persistence_from_file>
-    "${CMAKE_SOURCE_DIR}/data/filtered_simplicial_complex/bunny_5000_complex.fsc" "-p" "2" "-m" "0")
-add_test(NAME Persistent_cohomology_example_from_file_3_3_100 COMMAND $<TARGET_FILE:persistence_from_file>
-    "${CMAKE_SOURCE_DIR}/data/filtered_simplicial_complex/bunny_5000_complex.fsc" "-p" "3" "-m" "100")
 
 install(TARGETS plain_homology DESTINATION bin)
 install(TARGETS persistence_from_simple_simplex_tree DESTINATION bin)
diff --git a/src/Simplex_tree/example/CMakeLists.txt b/src/Simplex_tree/example/CMakeLists.txt
index f99b164..ae302dc 100644
--- a/src/Simplex_tree/example/CMakeLists.txt
+++ b/src/Simplex_tree/example/CMakeLists.txt
@@ -25,8 +25,6 @@ if(GMP_FOUND AND NOT CGAL_VERSION VERSION_LESS 4.11.0)
   if (TBB_FOUND)
     target_link_libraries(Simplex_tree_example_alpha_shapes_3_from_off ${TBB_LIBRARIES})
   endif()
-  add_test(NAME Simplex_tree_example_alpha_shapes_3_from_off COMMAND $<TARGET_FILE:Simplex_tree_example_alpha_shapes_3_from_off>
-      "${CMAKE_SOURCE_DIR}/data/points/bunny_5000.off")
 
 endif()
 
diff --git a/src/python/CMakeLists.txt b/src/python/CMakeLists.txt
index 5508cbc..1778290 100644
--- a/src/python/CMakeLists.txt
+++ b/src/python/CMakeLists.txt
@@ -256,36 +256,7 @@ if(PYTHONINTERP_FOUND)
 
       add_gudhi_py_test(test_bottleneck_distance)
 
-      # Cover complex
-      file(COPY ${CMAKE_SOURCE_DIR}/data/points/human.off DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/)
-      file(COPY ${CMAKE_SOURCE_DIR}/data/points/COIL_database/lucky_cat.off DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/)
-      file(COPY ${CMAKE_SOURCE_DIR}/data/points/COIL_database/lucky_cat_PCA1 DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/)
-      add_test(NAME cover_complex_nerve_example_py_test
-               WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
-               COMMAND ${CMAKE_COMMAND} -E env "PYTHONPATH=${CMAKE_CURRENT_BINARY_DIR}"
-               ${PYTHON_EXECUTABLE} "${CMAKE_CURRENT_SOURCE_DIR}/example/nerve_of_a_covering.py"
-               -f human.off -c 2 -r 10 -g 0.3)
-
-      add_test(NAME cover_complex_coordinate_gic_example_py_test
-               WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
-               COMMAND ${CMAKE_COMMAND} -E env "PYTHONPATH=${CMAKE_CURRENT_BINARY_DIR}"
-               ${PYTHON_EXECUTABLE} "${CMAKE_CURRENT_SOURCE_DIR}/example/coordinate_graph_induced_complex.py"
-               -f human.off -c 0 -v)
-
-      add_test(NAME cover_complex_functional_gic_example_py_test
-               WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
-               COMMAND ${CMAKE_COMMAND} -E env "PYTHONPATH=${CMAKE_CURRENT_BINARY_DIR}"
-               ${PYTHON_EXECUTABLE} "${CMAKE_CURRENT_SOURCE_DIR}/example/functional_graph_induced_complex.py"
-               -o lucky_cat.off
-               -f lucky_cat_PCA1 -v)
-
-      add_test(NAME cover_complex_voronoi_gic_example_py_test
-               WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
-               COMMAND ${CMAKE_COMMAND} -E env "PYTHONPATH=${CMAKE_CURRENT_BINARY_DIR}"
-               ${PYTHON_EXECUTABLE} "${CMAKE_CURRENT_SOURCE_DIR}/example/voronoi_graph_induced_complex.py"
-               -f human.off -n 700 -v)
-
-      add_gudhi_py_test(test_cover_complex)
+      
     endif (NOT CGAL_VERSION VERSION_LESS 4.11.0)
 
     if (NOT CGAL_WITH_EIGEN3_VERSION VERSION_LESS 4.11.0)