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from setuptools import setup, Extension
from Cython.Build import cythonize
from numpy import get_include as numpy_get_include
"""This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
Author(s): Vincent Rouvreau
Copyright (C) 2019 Inria
Modification(s):
- YYYY/MM Author: Description of the modification
"""
__author__ = "Vincent Rouvreau"
__copyright__ = "Copyright (C) 2016 Inria"
__license__ = "MIT"
modules = [@GUDHI_PYTHON_MODULES_TO_COMPILE@]
source_dir='@CMAKE_CURRENT_SOURCE_DIR@/gudhi/'
extra_compile_args=[@GUDHI_PYTHON_EXTRA_COMPILE_ARGS@]
extra_link_args=[@GUDHI_PYTHON_EXTRA_LINK_ARGS@]
libraries=[@GUDHI_PYTHON_LIBRARIES@]
library_dirs=[@GUDHI_PYTHON_LIBRARY_DIRS@]
include_dirs = [numpy_get_include(), '@CMAKE_CURRENT_SOURCE_DIR@/gudhi/', @GUDHI_PYTHON_INCLUDE_DIRS@]
runtime_library_dirs=[@GUDHI_PYTHON_RUNTIME_LIBRARY_DIRS@]
# Copied from https://github.com/pybind/python_example/blob/master/setup.py
class get_pybind_include(object):
"""Helper class to determine the pybind11 include path
The purpose of this class is to postpone importing pybind11
until it is actually installed, so that the ``get_include()``
method can be invoked. """
def __init__(self, user=False):
self.user = user
def __str__(self):
import pybind11
return pybind11.get_include(self.user)
# Create ext_modules list from module list
ext_modules = []
for module in modules:
ext_modules.append(Extension(
'gudhi.' + module,
sources = [source_dir + module + '.pyx',],
language = 'c++',
extra_compile_args=extra_compile_args,
extra_link_args=extra_link_args,
libraries=libraries,
library_dirs=library_dirs,
include_dirs=include_dirs,
runtime_library_dirs=runtime_library_dirs,))
ext_modules = cythonize(ext_modules)
ext_modules.append(Extension(
'gudhi.hera',
sources = [source_dir + 'hera.cc'],
language = 'c++',
include_dirs = include_dirs +
['@CMAKE_SOURCE_DIR@/ext/hera/geom_matching/wasserstein/include',
get_pybind_include(False), get_pybind_include(True)],
extra_compile_args=extra_compile_args + [@GUDHI_PYBIND11_EXTRA_COMPILE_ARGS@],
))
setup(
name = 'gudhi',
packages=["gudhi",],
author='GUDHI Editorial Board',
author_email='gudhi-contact@lists.gforge.inria.fr',
version='@GUDHI_VERSION@',
url='http://gudhi.gforge.inria.fr/',
ext_modules = ext_modules,
install_requires = ['cython','numpy >= 1.9','pybind11',],
setup_requires = ['numpy >= 1.9','pybind11',],
)
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