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authorMario Mulansky <mario.mulansky@gmx.net>2014-10-13 10:47:18 +0200
committerMario Mulansky <mario.mulansky@gmx.net>2014-10-13 10:47:18 +0200
commit4274c328a4927b392036d1c3b759b0787b05f300 (patch)
tree37a4f331006c63e7155bfb4c083c7e149f567eb8 /test/test_distance.py
parentef15a482604d8ce9bef094d470d8a905c6da49a0 (diff)
code formatting following PEP8
Diffstat (limited to 'test/test_distance.py')
-rw-r--r--test/test_distance.py37
1 files changed, 19 insertions, 18 deletions
diff --git a/test/test_distance.py b/test/test_distance.py
index dafe693..3371cbd 100644
--- a/test/test_distance.py
+++ b/test/test_distance.py
@@ -22,8 +22,8 @@ def test_isi():
t2 = np.array([0.3, 0.45, 0.8, 0.9, 0.95])
# pen&paper calculation of the isi distance
- expected_times = [0.0,0.2,0.3,0.4,0.45,0.6,0.7,0.8,0.9,0.95,1.0]
- expected_isi = [-0.1/0.3, -0.1/0.3, 0.05/0.2, 0.05/0.2, -0.15/0.35,
+ expected_times = [0.0, 0.2, 0.3, 0.4, 0.45, 0.6, 0.7, 0.8, 0.9, 0.95, 1.0]
+ expected_isi = [-0.1/0.3, -0.1/0.3, 0.05/0.2, 0.05/0.2, -0.15/0.35,
-0.25/0.35, -0.05/0.35, 0.2/0.3, 0.25/0.3, 0.25/0.3]
t1 = spk.add_auxiliary_spikes(t1, 1.0)
@@ -36,10 +36,10 @@ def test_isi():
assert_array_almost_equal(f.y, expected_isi, decimal=14)
# check with some equal spike times
- t1 = np.array([0.2,0.4,0.6])
- t2 = np.array([0.1,0.4,0.5,0.6])
+ t1 = np.array([0.2, 0.4, 0.6])
+ t2 = np.array([0.1, 0.4, 0.5, 0.6])
- expected_times = [0.0,0.1,0.2,0.4,0.5,0.6,1.0]
+ expected_times = [0.0, 0.1, 0.2, 0.4, 0.5, 0.6, 1.0]
expected_isi = [0.1/0.2, -0.1/0.3, -0.1/0.3, 0.1/0.2, 0.1/0.2, -0.0/0.5]
t1 = spk.add_auxiliary_spikes(t1, 1.0)
@@ -56,11 +56,11 @@ def test_spike():
t2 = np.array([0.3, 0.45, 0.8, 0.9, 0.95])
# pen&paper calculation of the spike distance
- expected_times = [0.0,0.2,0.3,0.4,0.45,0.6,0.7,0.8,0.9,0.95,1.0]
+ expected_times = [0.0, 0.2, 0.3, 0.4, 0.45, 0.6, 0.7, 0.8, 0.9, 0.95, 1.0]
s1 = np.array([0.1, 0.1, (0.1*0.1+0.05*0.1)/0.2, 0.05, (0.05*0.15 * 2)/0.2,
0.15, 0.1, 0.1*0.2/0.3, 0.1**2/0.3, 0.1*0.05/0.3, 0.1])
- s2 = np.array([0.1, 0.1*0.2/0.3, 0.1, (0.1*0.05 * 2)/.15, 0.05,
- (0.05*0.2+0.1*0.15)/0.35, (0.05*0.1+0.1*0.25)/0.35,
+ s2 = np.array([0.1, 0.1*0.2/0.3, 0.1, (0.1*0.05 * 2)/.15, 0.05,
+ (0.05*0.2+0.1*0.15)/0.35, (0.05*0.1+0.1*0.25)/0.35,
0.1, 0.1, 0.05, 0.05])
isi1 = np.array([0.2, 0.2, 0.2, 0.2, 0.2, 0.1, 0.3, 0.3, 0.3, 0.3])
isi2 = np.array([0.3, 0.3, 0.15, 0.15, 0.35, 0.35, 0.35, 0.1, 0.05, 0.05])
@@ -76,17 +76,17 @@ def test_spike():
assert_array_almost_equal(f.y2, expected_y2, decimal=14)
# check with some equal spike times
- t1 = np.array([0.2,0.4,0.6])
- t2 = np.array([0.1,0.4,0.5,0.6])
+ t1 = np.array([0.2, 0.4, 0.6])
+ t2 = np.array([0.1, 0.4, 0.5, 0.6])
- expected_times = [0.0,0.1,0.2,0.4,0.5,0.6,1.0]
+ expected_times = [0.0, 0.1, 0.2, 0.4, 0.5, 0.6, 1.0]
s1 = np.array([0.1, 0.1*0.1/0.2, 0.1, 0.0, 0.0, 0.0, 0.0])
s2 = np.array([0.1*0.1/0.3, 0.1, 0.1*0.2/0.3, 0.0, 0.1, 0.0, 0.0])
isi1 = np.array([0.2, 0.2, 0.2, 0.2, 0.2, 0.4])
isi2 = np.array([0.3, 0.3, 0.3, 0.1, 0.1, 0.4])
expected_y1 = (s1[:-1]*isi2+s2[:-1]*isi1) / (0.5*(isi1+isi2)**2)
expected_y2 = (s1[1:]*isi2+s2[1:]*isi1) / (0.5*(isi1+isi2)**2)
-
+
t1 = spk.add_auxiliary_spikes(t1, 1.0)
t2 = spk.add_auxiliary_spikes(t2, 1.0)
f = spk.spike_distance(t1, t2)
@@ -100,8 +100,8 @@ def check_multi_distance(dist_func, dist_func_multi):
# generate spike trains:
t1 = spk.add_auxiliary_spikes(np.array([0.2, 0.4, 0.6, 0.7]), 1.0)
t2 = spk.add_auxiliary_spikes(np.array([0.3, 0.45, 0.8, 0.9, 0.95]), 1.0)
- t3 = spk.add_auxiliary_spikes(np.array([0.2,0.4,0.6]), 1.0)
- t4 = spk.add_auxiliary_spikes(np.array([0.1,0.4,0.5,0.6]), 1.0)
+ t3 = spk.add_auxiliary_spikes(np.array([0.2, 0.4, 0.6]), 1.0)
+ t4 = spk.add_auxiliary_spikes(np.array([0.1, 0.4, 0.5, 0.6]), 1.0)
spike_trains = [t1, t2, t3, t4]
f12 = dist_func(t1, t2)
@@ -111,17 +111,17 @@ def check_multi_distance(dist_func, dist_func_multi):
f24 = dist_func(t2, t4)
f34 = dist_func(t3, t4)
- f_multi = dist_func_multi(spike_trains, [0,1])
+ f_multi = dist_func_multi(spike_trains, [0, 1])
assert f_multi.almost_equal(f12, decimal=14)
f = copy(f12)
f.add(f13)
f.add(f23)
f.mul_scalar(1.0/3)
- f_multi = dist_func_multi(spike_trains, [0,1,2])
+ f_multi = dist_func_multi(spike_trains, [0, 1, 2])
assert f_multi.almost_equal(f, decimal=14)
- f.mul_scalar(3) # revert above normalization
+ f.mul_scalar(3) # revert above normalization
f.add(f14)
f.add(f24)
f.add(f34)
@@ -139,6 +139,7 @@ def test_multi_spike():
if __name__ == "__main__":
- test_auxiliary_spikes()
test_isi()
test_spike()
+ test_multi_isi()
+ test_multi_spike()