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2016-03-09Merge pull request #21 from mariomulansky/unified_interface0.5.10.5.0Mario Mulansky
Unified interface
2016-03-09updated examples to use new unified interfaceMario Mulansky
removed all occasions of *multi functions from examples as they are considered deprecated now. Uses unified interface everywhere.
2016-03-09deprecated old multivariate functionsMario Mulansky
with the new interface, the previous functions for computing multivariate profiles and distances are obsolete. This is now noted in the docs.
2016-02-03fixed spike-sync bugMario Mulansky
fixed ugly bugs in code for computing multi-variate spike sync profile and multi-variate spike sync value.
2016-02-02new generic interface for spike_sync functionsMario Mulansky
Similar to the isi and spike distance functions, also the spike sync functions now support the new generic interface.
2016-01-31generic interface for spike distance/profileMario Mulansky
spike_profile and spike_distance now have a generic interface that allows to compute bi-variate and multi-variate results with the same function.
2016-01-31generalized interface to isi profile and distanceMario Mulansky
isi profile and distance functionc an now compute bi-variate and multi-variate results. Therefore, it can be called with different "overloads".
2016-01-28+numeric test of profilesMario Mulansky
2015-12-22add numeric tests to travisMario Mulansky
2015-12-22moved extensive random spike test to test/numericMario Mulansky
2015-12-22changed edge correction for single spikesMario Mulansky
Spike trains with single spikes now only get auxiliary spikes at the edges for the SPIKE distance instead of real spikes before.
2015-12-19python3 print function in new regression testMario Mulansky
2015-12-18travis bugfixMario Mulansky
2015-12-18travis bugfixMario Mulansky
2015-12-18travis bugfixMario Mulansky
2015-12-18add scipy to travisMario Mulansky
2015-12-18removed print outs from python backendMario Mulansky
2015-12-18bugfix for edge correctionMario Mulansky
fixed bug within new edge correction (auxiliary spike was ignored in some cases) added regression test with 10000 random spike train sets
2015-12-14Merge pull request #20 from mariomulansky/developMario Mulansky
Develop merge for version 0.4
2015-12-14removed directionality from __init__ and setup.pyMario Mulansky
2015-12-14update version strings and Changelog0.4.0Mario Mulansky
2015-12-14remove directionality from developMario Mulansky
directionality development happens in separate branch.
2015-12-14python backend updated for new edge correctionMario Mulansky
Eero's improved edge correction now also implemented in the python backend.
2015-12-14Merge branch 'develop' of github.com:mariomulansky/PySpike into developMario Mulansky
2015-12-14improved edge correction for spike distanceMario Mulansky
Improvement following Eeros suggestions to use auxiliary spike at the edges consistently with the corresponding corrected ISI intervals.
2015-12-14Merge pull request #19 from ignatenkobrain/py3_developMario Mulansky
Python 3 support
2015-12-14contributors: add myselfIgor Gnatenko
Signed-off-by: Igor Gnatenko <i.gnatenko.brain@gmail.com>
2015-12-14tests: allow to run out-of-treeIgor Gnatenko
Signed-off-by: Igor Gnatenko <i.gnatenko.brain@gmail.com>
2015-12-14stop using package_dataIgor Gnatenko
Signed-off-by: Igor Gnatenko <i.gnatenko.brain@gmail.com>
2015-12-14add metadata and testing under py3Igor Gnatenko
Signed-off-by: Igor Gnatenko <i.gnatenko.brain@gmail.com>
2015-12-14py3: divisionIgor Gnatenko
Signed-off-by: Igor Gnatenko <i.gnatenko.brain@gmail.com>
2015-12-14py3: xrange() -> range()Igor Gnatenko
Signed-off-by: Igor Gnatenko <i.gnatenko.brain@gmail.com>
2015-12-14py3: absolute_importIgor Gnatenko
Signed-off-by: Igor Gnatenko <i.gnatenko.brain@gmail.com>
2015-10-12added coincidence single profile to python backendMario Mulansky
missing function in python backend added, identified and fixed a bug in the implementation as well
2015-10-10spike sync filtering, cython sim annMario Mulansky
Added function for filtering out events based on a threshold for the spike sync values. Usefull for focusing on synchronous events during directionality analysis. Also added cython version of simulated annealing for performance.
2015-09-09added SPIKE-Sync based filteringMario Mulansky
new function filter_by_spike_sync removes spikes that have a multi-variate Spike Sync value below some threshold not yet fully tested, python backend missing.
2015-08-26completed python directionality backendMario Mulansky
2015-08-26further refactoring of directionalityMario Mulansky
2015-08-26reorganized directionality moduleMario Mulansky
2015-08-17add python backend for directionalityMario Mulansky
2015-08-17major renaming of spike train order functionsMario Mulansky
2015-08-17first unit tests for directionalityMario Mulansky
2015-08-17fix for #14Mario Mulansky
test case and fix for Issue #14. Spike-Sync function now correctly deal with empty intervals as well.
2015-08-17fix #15Mario Mulansky
add test case and fix for Issue #15 closes #15
2015-08-13more directionality functionsMario Mulansky
+ spike delay asymmetry profile + spike delay dual profile
2015-08-12new spike delay asymmetry measuresMario Mulansky
added first version of spike delay asymmetry functions. still incomplete and untested.
2015-08-11add regression #11 test caseMario Mulansky
2015-08-11Merge branch 'ImmanuelSamuel-master' into developMario Mulansky
fixes #11
2015-08-10Added more //ImmanuelSamuel
2015-08-10Used // instead of type conversionImmanuelSamuel
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