Age | Commit message (Collapse) | Author | |
---|---|---|---|
2016-03-29 | Merge branch 'master' into new_directionality | Mario Mulansky | |
Conflicts: pyspike/__init__.py pyspike/cython/cython_directionality.pyx pyspike/cython/directionality_python_backend.py pyspike/spike_directionality.py setup.py | |||
2016-03-24 | bugfix for Python 3 (xrange->range) | Mario Mulansky | |
2016-03-24 | quick fix in format string | Mario Mulansky | |
2016-03-24 | add empty spike trains when loading from txt | Mario Mulansky | |
treatment of empty lines was incorrect. now empty spike trains are created from empty lines in the txt file if parameter ignore_empty_lines=False is given. | |||
2016-03-24 | added test for save spike train functionality | Mario Mulansky | |
2016-03-24 | +function for saving spike trains to txt files | Mario Mulansky | |
save_spike_trains_to_txt allows to save spike train data into txt files which can then be loaded via load_spike_trains_from_txt again. | |||
2016-03-09 | new version: 0.5.1 | Mario Mulansky | |
2016-03-09 | Merge pull request #21 from mariomulansky/unified_interface0.5.10.5.0 | Mario Mulansky | |
Unified interface | |||
2016-03-09 | updated examples to use new unified interface | Mario Mulansky | |
removed all occasions of *multi functions from examples as they are considered deprecated now. Uses unified interface everywhere. | |||
2016-03-09 | deprecated old multivariate functions | Mario Mulansky | |
with the new interface, the previous functions for computing multivariate profiles and distances are obsolete. This is now noted in the docs. | |||
2016-02-03 | fixed spike-sync bug | Mario Mulansky | |
fixed ugly bugs in code for computing multi-variate spike sync profile and multi-variate spike sync value. | |||
2016-02-02 | new generic interface for spike_sync functions | Mario Mulansky | |
Similar to the isi and spike distance functions, also the spike sync functions now support the new generic interface. | |||
2016-01-31 | generic interface for spike distance/profile | Mario Mulansky | |
spike_profile and spike_distance now have a generic interface that allows to compute bi-variate and multi-variate results with the same function. | |||
2016-01-31 | generalized interface to isi profile and distance | Mario Mulansky | |
isi profile and distance functionc an now compute bi-variate and multi-variate results. Therefore, it can be called with different "overloads". | |||
2016-01-28 | +numeric test of profiles | Mario Mulansky | |
2015-12-22 | add numeric tests to travis | Mario Mulansky | |
2015-12-22 | moved extensive random spike test to test/numeric | Mario Mulansky | |
2015-12-22 | changed edge correction for single spikes | Mario Mulansky | |
Spike trains with single spikes now only get auxiliary spikes at the edges for the SPIKE distance instead of real spikes before. | |||
2015-12-19 | python3 print function in new regression test | Mario Mulansky | |
2015-12-18 | travis bugfix | Mario Mulansky | |
2015-12-18 | travis bugfix | Mario Mulansky | |
2015-12-18 | travis bugfix | Mario Mulansky | |
2015-12-18 | add scipy to travis | Mario Mulansky | |
2015-12-18 | removed print outs from python backend | Mario Mulansky | |
2015-12-18 | bugfix for edge correction | Mario Mulansky | |
fixed bug within new edge correction (auxiliary spike was ignored in some cases) added regression test with 10000 random spike train sets | |||
2015-12-14 | Merge pull request #20 from mariomulansky/develop | Mario Mulansky | |
Develop merge for version 0.4 | |||
2015-12-14 | removed directionality from __init__ and setup.py | Mario Mulansky | |
2015-12-14 | update version strings and Changelog0.4.0 | Mario Mulansky | |
2015-12-14 | remove directionality from develop | Mario Mulansky | |
directionality development happens in separate branch. | |||
2015-12-14 | python backend updated for new edge correction | Mario Mulansky | |
Eero's improved edge correction now also implemented in the python backend. | |||
2015-12-14 | Merge branch 'develop' of github.com:mariomulansky/PySpike into develop | Mario Mulansky | |
2015-12-14 | improved edge correction for spike distance | Mario Mulansky | |
Improvement following Eeros suggestions to use auxiliary spike at the edges consistently with the corresponding corrected ISI intervals. | |||
2015-12-14 | Merge pull request #19 from ignatenkobrain/py3_develop | Mario Mulansky | |
Python 3 support | |||
2015-12-14 | contributors: add myself | Igor Gnatenko | |
Signed-off-by: Igor Gnatenko <i.gnatenko.brain@gmail.com> | |||
2015-12-14 | tests: allow to run out-of-tree | Igor Gnatenko | |
Signed-off-by: Igor Gnatenko <i.gnatenko.brain@gmail.com> | |||
2015-12-14 | stop using package_data | Igor Gnatenko | |
Signed-off-by: Igor Gnatenko <i.gnatenko.brain@gmail.com> | |||
2015-12-14 | add metadata and testing under py3 | Igor Gnatenko | |
Signed-off-by: Igor Gnatenko <i.gnatenko.brain@gmail.com> | |||
2015-12-14 | py3: division | Igor Gnatenko | |
Signed-off-by: Igor Gnatenko <i.gnatenko.brain@gmail.com> | |||
2015-12-14 | py3: xrange() -> range() | Igor Gnatenko | |
Signed-off-by: Igor Gnatenko <i.gnatenko.brain@gmail.com> | |||
2015-12-14 | py3: absolute_import | Igor Gnatenko | |
Signed-off-by: Igor Gnatenko <i.gnatenko.brain@gmail.com> | |||
2015-10-12 | added coincidence single profile to python backend | Mario Mulansky | |
missing function in python backend added, identified and fixed a bug in the implementation as well | |||
2015-10-10 | spike sync filtering, cython sim ann | Mario Mulansky | |
Added function for filtering out events based on a threshold for the spike sync values. Usefull for focusing on synchronous events during directionality analysis. Also added cython version of simulated annealing for performance. | |||
2015-09-09 | added SPIKE-Sync based filtering | Mario Mulansky | |
new function filter_by_spike_sync removes spikes that have a multi-variate Spike Sync value below some threshold not yet fully tested, python backend missing. | |||
2015-08-26 | completed python directionality backend | Mario Mulansky | |
2015-08-26 | further refactoring of directionality | Mario Mulansky | |
2015-08-26 | reorganized directionality module | Mario Mulansky | |
2015-08-17 | add python backend for directionality | Mario Mulansky | |
2015-08-17 | major renaming of spike train order functions | Mario Mulansky | |
2015-08-17 | first unit tests for directionality | Mario Mulansky | |
2015-08-17 | fix for #14 | Mario Mulansky | |
test case and fix for Issue #14. Spike-Sync function now correctly deal with empty intervals as well. |