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2021-12-29Add changelog note to Readme, remvove .travis.ymlupstream/latestMario Mulansky
2021-12-29Bump version to 0.7Mario Mulansky
2021-12-29Set language level 3 in cython filesMario Mulansky
2021-12-29Add cython to test matrixMario Mulansky
2021-12-29Call python -m pytest in test workflowMario Mulansky
2021-12-29Remove --inplace from workflow installMario Mulansky
2021-12-29Use pytest in CI instead of nosetestsMario Mulansky
2021-12-29Add setup.py command to test workflowMario Mulansky
2021-12-29Fix typo in workflowMario Mulansky
2021-12-29Create python-package.ymlMario Mulansky
Switch from travis to GitHub actions
2021-12-29Merge branch 'master' into developMario Mulansky
2021-12-29Fix readme links with updated links (#54)Xhuliano Brace
2021-12-29Python 3.10 compatibility fix (#53)gspr
Importing Sequence et al. from collections has been deprecated since Python 3.7.
2021-12-29Use assert_allclose instead of assert_equal in tests to allow for different ↵gspr
floating point behavior on different architectures or optimization levels. (#49)
2018-09-20Add missing line in tutorialMario Mulansky
2018-09-20Spike Order support (#39)0.6.0Mario Mulansky
* reorganized directionality module * further refactoring of directionality * completed python directionality backend * added SPIKE-Sync based filtering new function filter_by_spike_sync removes spikes that have a multi-variate Spike Sync value below some threshold not yet fully tested, python backend missing. * spike sync filtering, cython sim ann Added function for filtering out events based on a threshold for the spike sync values. Usefull for focusing on synchronous events during directionality analysis. Also added cython version of simulated annealing for performance. * added coincidence single profile to python backend missing function in python backend added, identified and fixed a bug in the implementation as well * updated test case to new spike sync behavior * python3 fixes * another python3 fix * reorganized directionality module * further refactoring of directionality * completed python directionality backend * added SPIKE-Sync based filtering new function filter_by_spike_sync removes spikes that have a multi-variate Spike Sync value below some threshold not yet fully tested, python backend missing. * spike sync filtering, cython sim ann Added function for filtering out events based on a threshold for the spike sync values. Usefull for focusing on synchronous events during directionality analysis. Also added cython version of simulated annealing for performance. * added coincidence single profile to python backend missing function in python backend added, identified and fixed a bug in the implementation as well * updated test case to new spike sync behavior * python3 fixes * another python3 fix * Fix absolute imports in directionality measures * remove commented code * Add directionality to docs, bump version * Clean up directionality module, add doxy. * Remove debug print from tests * Fix bug in calling Python backend * Fix incorrect integrals in PieceWiseConstFunc (#36) * Add (some currently failing) tests for PieceWiseConstFunc.integral * Fix implementation of PieceWiseConstFunc.integral Just by adding a special condition for when we are only taking an integral "between" two edges of a PieceWiseConstFunc All tests now pass. Fixes #33. * Add PieceWiseConstFunc.integral tests for ValueError * Add testing bounds of integral * Raise ValueError in function implementation * Fix incorrect integrals in PieceWiseLinFunc (#38) Integrals of piece-wise linear functions were incorrect if the requested interval lies completely between two support points. This has been fixed, and a unit test exercising this behavior was added. Fixes #38 * Add Spike Order example and Tutorial section Adds an example computing spike order profile and the optimal spike train order. Also adds a section on spike train order to the tutorial.
2018-09-20Add Spike Order example and Tutorial sectionMario Mulansky
Adds an example computing spike order profile and the optimal spike train order. Also adds a section on spike train order to the tutorial.
2018-09-19Fix incorrect integrals in PieceWiseLinFunc (#38)Mario Mulansky
Integrals of piece-wise linear functions were incorrect if the requested interval lies completely between two support points. This has been fixed, and a unit test exercising this behavior was added. Fixes #38
2018-07-21Fix incorrect integrals in PieceWiseConstFunc (#36)Jonathan Jouty
* Add (some currently failing) tests for PieceWiseConstFunc.integral * Fix implementation of PieceWiseConstFunc.integral Just by adding a special condition for when we are only taking an integral "between" two edges of a PieceWiseConstFunc All tests now pass. Fixes #33. * Add PieceWiseConstFunc.integral tests for ValueError * Add testing bounds of integral * Raise ValueError in function implementation
2018-07-21Fix bug in calling Python backendMario Mulansky
2018-07-15Remove debug print from testsMario Mulansky
2018-07-15Clean up directionality module, add doxy.Mario Mulansky
2018-06-09Add directionality to docs, bump versionMario Mulansky
2018-06-09Merge branch 'new_directionality' into developMario Mulansky
2018-06-09Merge branch 'develop' of github.com:mariomulansky/PySpike into developMario Mulansky
2018-06-09remove commented codeMario Mulansky
2018-06-02Merge branch 'new_directionality' of github.com:mariomulansky/PySpike into ↵Mario Mulansky
new_directionality
2018-06-02Fix absolute imports in directionality measuresMario Mulansky
2018-06-02another python3 fixMario Mulansky
2018-06-02python3 fixesMario Mulansky
2018-06-02updated test case to new spike sync behaviorMario Mulansky
2018-06-02added coincidence single profile to python backendMario Mulansky
missing function in python backend added, identified and fixed a bug in the implementation as well
2018-06-02spike sync filtering, cython sim annMario Mulansky
Added function for filtering out events based on a threshold for the spike sync values. Usefull for focusing on synchronous events during directionality analysis. Also added cython version of simulated annealing for performance.
2018-06-02added SPIKE-Sync based filteringMario Mulansky
new function filter_by_spike_sync removes spikes that have a multi-variate Spike Sync value below some threshold not yet fully tested, python backend missing.
2018-06-02completed python directionality backendMario Mulansky
2018-06-02further refactoring of directionalityMario Mulansky
2018-06-02reorganized directionality moduleMario Mulansky
2018-02-10Merge pull request #32 from mariomulansky/remove-python33Mario Mulansky
Remove Python 3.3 from travis
2018-02-10Merge pull request #31 from jonathanjouty/masterMario Mulansky
Make merge_spike_trains work with empty spike trains, and faster
2018-02-07Remove Python 3.3 from travisMario Mulansky
Python 3.3 is not supported by scipy anymore. This removes Python 3.3 from the CI environments.
2018-02-04Make merge_spike_trains work with empty spike trains, and fasterJonathan Jouty
1. Fixes https://github.com/mariomulansky/PySpike/issues/30 2. Code is faster 3. Add test case
2017-10-05Merge pull request #28 from mariomulansky/masterMario Mulansky
Master back into develop
2017-10-04Version bumpMario Mulansky
2017-10-04Fix library status stringMario Mulansky
2017-10-04Fix typo in emailMario Mulansky
2017-10-04Merge branch 'master' of github.com:mariomulansky/PySpikeMario Mulansky
2017-10-04Update version in docs0.5.2Mario Mulansky
2017-10-04Merge pull request #27 from mariomulansky/developMario Mulansky
Merge v 0.5.2
2017-10-04defer numpy import to allow install_requires to do its job (fixes #24)Dan Meliza
2017-10-04Bump versionMario Mulansky
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