From 40e6372c0813cb8f34abd0ffee353bde7a96f158 Mon Sep 17 00:00:00 2001 From: Mario Mulansky Date: Wed, 13 May 2015 11:26:38 +0200 Subject: new profiles example --- examples/profiles.py | 66 ++++++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 66 insertions(+) create mode 100644 examples/profiles.py diff --git a/examples/profiles.py b/examples/profiles.py new file mode 100644 index 0000000..05494bd --- /dev/null +++ b/examples/profiles.py @@ -0,0 +1,66 @@ +""" profiles.py + +Simple example showing some functionality of distance profiles. + +Copyright 2015, Mario Mulansky + +Distributed under the BSD License +""" + + +from __future__ import print_function + +import pyspike as spk + +spike_trains = spk.load_spike_trains_from_txt("PySpike_testdata.txt", + edges=(0, 4000)) + +##### ISI PROFILES ####### + +# compute the ISI profile of the first two spike trains +f = spk.isi_profile(spike_trains[0], spike_trains[1]) + +# ISI values at certain points +t = 1200 +print("ISI value at t =", t, ":", f(t)) +t = [900, 1100, 2000, 3100] +print("ISI value at t =", t, ":", f(t)) +print("Average ISI distance:", f.avrg()) +print() + +# compute the multivariate ISI profile +f = spk.isi_profile_multi(spike_trains) + +t = 1200 +print("Multivariate ISI value at t =", t, ":", f(t)) +t = [900, 1100, 2000, 3100] +print("Multivariate ISI value at t =", t, ":", f(t)) +print("Average multivariate ISI distance:", f.avrg()) +print() +print() + +# for plotting, use the get_plottable_data() member function, see plot.py + + +##### SPIKE PROFILES ####### + +# compute the SPIKE profile of the first two spike trains +f = spk.spike_profile(spike_trains[0], spike_trains[1]) + +# SPIKE distance values at certain points +t = 1200 +print("SPIKE value at t =", t, ":", f(t)) +t = [900, 1100, 2000, 3100] +print("SPIKE value at t =", t, ":", f(t)) +print("Average SPIKE distance:", f.avrg()) +print() + +# compute the multivariate SPIKE profile +f = spk.spike_profile_multi(spike_trains) + +# SPIKE values at certain points +t = 1200 +print("Multivariate SPIKE value at t =", t, ":", f(t)) +t = [900, 1100, 2000, 3100] +print("Multivariate SPIKE value at t =", t, ":", f(t)) +print("Average multivariate SPIKE distance:", f.avrg()) -- cgit v1.2.3