From fcfe1f9637973c4c5f7f2f57aba4ce77c0fb2002 Mon Sep 17 00:00:00 2001
From: Mario Mulansky <mario.mulansky@gmx.net>
Date: Tue, 4 Nov 2014 12:02:08 +0100
Subject: packaging info to distribute on PyPI

---
 Readme.rst | 19 +++++++++++++---
 setup.cfg  |  2 ++
 setup.py   | 73 ++++++++++++++++++++++++++++++++++++++++++++++++++++----------
 3 files changed, 80 insertions(+), 14 deletions(-)
 create mode 100644 setup.cfg

diff --git a/Readme.rst b/Readme.rst
index 662cc1f..4053995 100644
--- a/Readme.rst
+++ b/Readme.rst
@@ -20,12 +20,25 @@ All source codes are published under the BSD_License_.
 Requirements and Installation
 -----------------------------
 
-To use PySpike you need Python installed with the following additional packages:
+PySpike is available at Python Package Index and this is the easiest way to obtain the PySpike package.
+If you have `pip` installed, just run
+
+.. code:: bash
+
+   sudo pip install pyspike
+
+to install pyspike.
+PySpike requires `numpy` as minimal requirement, as well as a C compiler to generate the binaries.
+
+Install from Github sources
+...........................
+
+You can also obtain the latest PySpike developer version from the github repository.
+For that, make sure you have the following Python libraries installed:
 
 - numpy
-- scipy
-- matplotlib
 - cython
+- matplotlib (for the examples)
 - nosetests (for running the tests)
 
 In particular, make sure that cython_ is configured properly and able to locate a C compiler, otherwise PySpike will use the much slower Python implementations.
diff --git a/setup.cfg b/setup.cfg
new file mode 100644
index 0000000..2aee194
--- /dev/null
+++ b/setup.cfg
@@ -0,0 +1,2 @@
+[metadata]
+description-file = Readme.rst
diff --git a/setup.py b/setup.py
index fc8d0d2..3bae9d5 100644
--- a/setup.py
+++ b/setup.py
@@ -1,24 +1,75 @@
 """ setup.py
 
-Handles the compilation of pyx source files
-
-run as:
+to compile cython files:
 python setup.py build_ext --inplace
 
+
 Copyright 2014, Mario Mulansky <mario.mulansky@gmx.net>
 
 Distributed under the BSD License
 
 """
-from distutils.core import setup
+from setuptools import setup, find_packages
+from distutils.extension import Extension
 import numpy
 
 try:
-    from Cython.Build import cythonize
-    setup(
-        ext_modules=cythonize("pyspike/*.pyx"),
-        include_dirs=[numpy.get_include()]
-    )
+    from Cython.Distutils import build_ext
 except ImportError:
-    print("Error: Cython is not installed! You will only be able to use the \
-much slower Python backend in PySpike.")
+    use_cython = False
+else:
+    use_cython = True
+
+cmdclass = {}
+ext_modules = []
+
+if use_cython:
+    ext_modules += [
+        Extension("pyspike.cython_add", ["pyspike/cython_add.pyx"]),
+        Extension("pyspike.cython_distance", ["pyspike/cython_distance.pyx"]),
+    ]
+    cmdclass.update({'build_ext': build_ext})
+else:
+    ext_modules += [
+        Extension("pyspike.cython_add", ["pyspike/cython_add.c"]),
+        Extension("pyspike.cython_distance", ["pyspike/cython_distance.c"]),
+    ]
+
+setup(
+    name='pyspike',
+    packages=find_packages(exclude=['doc']),
+    version='0.1.2',
+    cmdclass=cmdclass,
+    ext_modules=ext_modules,
+    description='A Python library for the numerical analysis of spike\
+train similarity',
+    author='Mario Mulansky',
+    author_email='mario.mulanskygmx.net',
+    license='BSD',
+    url='https://github.com/mariomulansky/PySpike',
+    # download_url='https://github.com/mariomulansky/PySpike/tarball/0.1',
+    install_requires=['numpy'],
+    keywords=['data analysis', 'spike', 'neuroscience'],  # arbitrary keywords
+    classifiers=[
+        # How mature is this project? Common values are
+        #   3 - Alpha
+        #   4 - Beta
+        #   5 - Production/Stable
+        'Development Status :: 3 - Alpha',
+
+        # Indicate who your project is intended for
+        'Intended Audience :: Science/Research',
+        'Topic :: Scientific/Engineering',
+        'Topic :: Scientific/Engineering :: Information Analysis',
+
+        'License :: OSI Approved :: BSD License',
+
+        'Programming Language :: Python :: 2',
+        'Programming Language :: Python :: 2.6',
+        'Programming Language :: Python :: 2.7',
+    ],
+    package_data={
+        'pyspike': ['cython_add.c', 'cython_distance.c'],
+        'test': ['Spike_testdata.txt']
+    }
+)
-- 
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