Make the license a comment instead of a string

I think this interacts better with sphinx automodule

18 files changed, 144 insertions, 162 deletions

diff --git a/src/python/gudhi/__init__.py.in b/src/python/gudhi/__init__.py.in
index 02888fff..0c462b02 100644
--- a/src/python/gudhi/__init__.py.in
+++ b/src/python/gudhi/__init__.py.in
@@ -1,14 +1,13 @@
 from importlib import import_module
 
-"""This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
-    See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
-    Author(s):       Vincent Rouvreau
-
-   Copyright (C) 2016  Inria
-
-   Modification(s):
-     - YYYY/MM Author: Description of the modification
-"""
+# This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
+#  See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
+#  Author(s):       Vincent Rouvreau
+#
+# Copyright (C) 2016  Inria
+#
+# Modification(s):
+#   - YYYY/MM Author: Description of the modification
 
 __author__ = "GUDHI Editorial Board"
 __copyright__ = "Copyright (C) 2016 Inria"
diff --git a/src/python/gudhi/alpha_complex.pyx b/src/python/gudhi/alpha_complex.pyx
index a85c47c8..8f2c98d5 100644
--- a/src/python/gudhi/alpha_complex.pyx
+++ b/src/python/gudhi/alpha_complex.pyx
@@ -9,15 +9,14 @@ import os
 from gudhi.simplex_tree cimport *
 from gudhi.simplex_tree import SimplexTree
 
-""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
-    See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
-    Author(s):       Vincent Rouvreau
-
-    Copyright (C) 2016 Inria
-
-    Modification(s):
-      - YYYY/MM Author: Description of the modification
-"""
+# This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
+# See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
+# Author(s):       Vincent Rouvreau
+#
+# Copyright (C) 2016 Inria
+#
+# Modification(s):
+#   - YYYY/MM Author: Description of the modification
 
 __author__ = "Vincent Rouvreau"
 __copyright__ = "Copyright (C) 2016 Inria"
diff --git a/src/python/gudhi/bottleneck.pyx b/src/python/gudhi/bottleneck.pyx
index 4b378cbc..c2361024 100644
--- a/src/python/gudhi/bottleneck.pyx
+++ b/src/python/gudhi/bottleneck.pyx
@@ -3,15 +3,14 @@ from libcpp.vector cimport vector
 from libcpp.utility cimport pair
 import os
 
-""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
-    See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
-    Author(s):       Vincent Rouvreau
-
-    Copyright (C) 2016 Inria
-
-    Modification(s):
-      - YYYY/MM Author: Description of the modification
-"""
+# This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
+# See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
+# Author(s):       Vincent Rouvreau
+#
+# Copyright (C) 2016 Inria
+#
+# Modification(s):
+#   - YYYY/MM Author: Description of the modification
 
 __author__ = "Vincent Rouvreau"
 __copyright__ = "Copyright (C) 2016 Inria"
diff --git a/src/python/gudhi/cubical_complex.pyx b/src/python/gudhi/cubical_complex.pyx
index 579c942b..011c407c 100644
--- a/src/python/gudhi/cubical_complex.pyx
+++ b/src/python/gudhi/cubical_complex.pyx
@@ -7,15 +7,14 @@ import os
 
 from numpy import array as np_array
 
-""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
-    See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
-    Author(s):       Vincent Rouvreau
-
-    Copyright (C) 2016 Inria
-
-    Modification(s):
-      - YYYY/MM Author: Description of the modification
-"""
+# This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
+# See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
+# Author(s):       Vincent Rouvreau
+#
+# Copyright (C) 2016 Inria
+#
+# Modification(s):
+#   - YYYY/MM Author: Description of the modification
 
 __author__ = "Vincent Rouvreau"
 __copyright__ = "Copyright (C) 2016 Inria"
diff --git a/src/python/gudhi/euclidean_strong_witness_complex.pyx b/src/python/gudhi/euclidean_strong_witness_complex.pyx
index 0e5b544a..e3f451f0 100644
--- a/src/python/gudhi/euclidean_strong_witness_complex.pyx
+++ b/src/python/gudhi/euclidean_strong_witness_complex.pyx
@@ -6,15 +6,14 @@ from libc.stdint cimport intptr_t
 from gudhi.simplex_tree cimport *
 from gudhi.simplex_tree import SimplexTree
 
-""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
-    See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
-    Author(s):       Vincent Rouvreau
-
-    Copyright (C) 2016 Inria
-
-    Modification(s):
-      - YYYY/MM Author: Description of the modification
-"""
+# This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
+# See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
+# Author(s):       Vincent Rouvreau
+#
+# Copyright (C) 2016 Inria
+#
+# Modification(s):
+#   - YYYY/MM Author: Description of the modification
 
 __author__ = "Vincent Rouvreau"
 __copyright__ = "Copyright (C) 2016 Inria"
diff --git a/src/python/gudhi/euclidean_witness_complex.pyx b/src/python/gudhi/euclidean_witness_complex.pyx
index 86d2d996..84a8ea1a 100644
--- a/src/python/gudhi/euclidean_witness_complex.pyx
+++ b/src/python/gudhi/euclidean_witness_complex.pyx
@@ -6,15 +6,14 @@ from libc.stdint cimport intptr_t
 from gudhi.simplex_tree cimport *
 from gudhi.simplex_tree import SimplexTree
 
-""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
-    See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
-    Author(s):       Vincent Rouvreau
-
-    Copyright (C) 2016 Inria
-
-    Modification(s):
-      - YYYY/MM Author: Description of the modification
-"""
+# This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
+# See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
+# Author(s):       Vincent Rouvreau
+#
+# Copyright (C) 2016 Inria
+#
+# Modification(s):
+#   - YYYY/MM Author: Description of the modification
 
 __author__ = "Vincent Rouvreau"
 __copyright__ = "Copyright (C) 2016 Inria"
diff --git a/src/python/gudhi/nerve_gic.pyx b/src/python/gudhi/nerve_gic.pyx
index 2b230b8c..acb78564 100644
--- a/src/python/gudhi/nerve_gic.pyx
+++ b/src/python/gudhi/nerve_gic.pyx
@@ -9,15 +9,14 @@ from libc.stdint cimport intptr_t
 from gudhi.simplex_tree cimport *
 from gudhi.simplex_tree import SimplexTree
 
-""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
-    See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
-    Author(s):       Vincent Rouvreau
-
-    Copyright (C) 2018 Inria
-
-    Modification(s):
-      - YYYY/MM Author: Description of the modification
-"""
+# This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
+# See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
+# Author(s):       Vincent Rouvreau
+#
+# Copyright (C) 2018 Inria
+#
+# Modification(s):
+#   - YYYY/MM Author: Description of the modification
 
 __author__ = "Vincent Rouvreau"
 __copyright__ = "Copyright (C) 2018 Inria"
diff --git a/src/python/gudhi/off_reader.pyx b/src/python/gudhi/off_reader.pyx
index 27a89870..225e981c 100644
--- a/src/python/gudhi/off_reader.pyx
+++ b/src/python/gudhi/off_reader.pyx
@@ -3,15 +3,14 @@ from libcpp.vector cimport vector
 from libcpp.string cimport string
 import os
 
-""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
-    See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
-    Author(s):       Vincent Rouvreau
-
-    Copyright (C) 2016 Inria
-
-    Modification(s):
-      - YYYY/MM Author: Description of the modification
-"""
+# This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
+# See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
+# Author(s):       Vincent Rouvreau
+#
+# Copyright (C) 2016 Inria
+#
+# Modification(s):
+#   - YYYY/MM Author: Description of the modification
 
 __author__ = "Vincent Rouvreau"
 __copyright__ = "Copyright (C) 2016 Inria"
diff --git a/src/python/gudhi/periodic_cubical_complex.pyx b/src/python/gudhi/periodic_cubical_complex.pyx
index 88223afb..c89055db 100644
--- a/src/python/gudhi/periodic_cubical_complex.pyx
+++ b/src/python/gudhi/periodic_cubical_complex.pyx
@@ -7,15 +7,14 @@ import os
 
 from numpy import array as np_array
 
-""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
-    See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
-    Author(s):       Vincent Rouvreau
-
-    Copyright (C) 2016 Inria
-
-    Modification(s):
-      - YYYY/MM Author: Description of the modification
-"""
+# This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
+# See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
+# Author(s):       Vincent Rouvreau
+#
+# Copyright (C) 2016 Inria
+#
+# Modification(s):
+#   - YYYY/MM Author: Description of the modification
 
 __author__ = "Vincent Rouvreau"
 __copyright__ = "Copyright (C) 2016 Inria"
diff --git a/src/python/gudhi/persistence_graphical_tools.py b/src/python/gudhi/persistence_graphical_tools.py
index 181bc8ea..43a00459 100644
--- a/src/python/gudhi/persistence_graphical_tools.py
+++ b/src/python/gudhi/persistence_graphical_tools.py
@@ -5,15 +5,14 @@ import numpy as np
 from gudhi.reader_utils import read_persistence_intervals_in_dimension
 from gudhi.reader_utils import read_persistence_intervals_grouped_by_dimension
 
-""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
-    See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
-    Author(s):       Vincent Rouvreau, Bertrand Michel
-
-    Copyright (C) 2016 Inria
-
-    Modification(s):
-      - YYYY/MM Author: Description of the modification
-"""
+# This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
+# See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
+# Author(s):       Vincent Rouvreau, Bertrand Michel
+#
+# Copyright (C) 2016 Inria
+#
+# Modification(s):
+#   - YYYY/MM Author: Description of the modification
 
 __author__ = "Vincent Rouvreau, Bertrand Michel"
 __copyright__ = "Copyright (C) 2016 Inria"
diff --git a/src/python/gudhi/reader_utils.pyx b/src/python/gudhi/reader_utils.pyx
index b266c783..6994c4f9 100644
--- a/src/python/gudhi/reader_utils.pyx
+++ b/src/python/gudhi/reader_utils.pyx
@@ -7,15 +7,14 @@ from libcpp.pair cimport pair
 from os import path
 from numpy import array as np_array
 
-""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
-    See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
-    Author(s):       Vincent Rouvreau
-
-    Copyright (C) 2017 Inria
-
-    Modification(s):
-      - YYYY/MM Author: Description of the modification
-"""
+# This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
+# See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
+# Author(s):       Vincent Rouvreau
+#
+# Copyright (C) 2017 Inria
+#
+# Modification(s):
+#   - YYYY/MM Author: Description of the modification
 
 __author__ = "Vincent Rouvreau"
 __copyright__ = "Copyright (C) 2017 Inria"
diff --git a/src/python/gudhi/rips_complex.pyx b/src/python/gudhi/rips_complex.pyx
index f2cd6a8d..cbbbab0d 100644
--- a/src/python/gudhi/rips_complex.pyx
+++ b/src/python/gudhi/rips_complex.pyx
@@ -8,15 +8,14 @@ from libc.stdint cimport intptr_t
 from gudhi.simplex_tree cimport *
 from gudhi.simplex_tree import SimplexTree
 
-""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
-    See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
-    Author(s):       Vincent Rouvreau
-
-    Copyright (C) 2016 Inria
-
-    Modification(s):
-      - YYYY/MM Author: Description of the modification
-"""
+# This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
+# See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
+# Author(s):       Vincent Rouvreau
+#
+# Copyright (C) 2016 Inria
+#
+# Modification(s):
+#   - YYYY/MM Author: Description of the modification
 
 __author__ = "Vincent Rouvreau"
 __copyright__ = "Copyright (C) 2016 Inria"
diff --git a/src/python/gudhi/simplex_tree.pyx b/src/python/gudhi/simplex_tree.pyx
index 90ddf6dd..ade3bf6c 100644
--- a/src/python/gudhi/simplex_tree.pyx
+++ b/src/python/gudhi/simplex_tree.pyx
@@ -2,15 +2,14 @@ from libc.stdint cimport intptr_t
 from numpy import array as np_array
 cimport simplex_tree
 
-""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
-    See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
-    Author(s):       Vincent Rouvreau
-
-    Copyright (C) 2016 Inria
-
-    Modification(s):
-      - YYYY/MM Author: Description of the modification
-"""
+# This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
+# See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
+# Author(s):       Vincent Rouvreau
+#
+# Copyright (C) 2016 Inria
+#
+# Modification(s):
+#   - YYYY/MM Author: Description of the modification
 
 __author__ = "Vincent Rouvreau"
 __copyright__ = "Copyright (C) 2016 Inria"
diff --git a/src/python/gudhi/strong_witness_complex.pyx b/src/python/gudhi/strong_witness_complex.pyx
index e35ba6ad..66d49b49 100644
--- a/src/python/gudhi/strong_witness_complex.pyx
+++ b/src/python/gudhi/strong_witness_complex.pyx
@@ -6,15 +6,14 @@ from libc.stdint cimport intptr_t
 from gudhi.simplex_tree cimport *
 from gudhi.simplex_tree import SimplexTree
 
-""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
-    See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
-    Author(s):       Vincent Rouvreau
-
-    Copyright (C) 2016 Inria
-
-    Modification(s):
-      - YYYY/MM Author: Description of the modification
-"""
+# This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
+# See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
+# Author(s):       Vincent Rouvreau
+#
+# Copyright (C) 2016 Inria
+#
+# Modification(s):
+#   - YYYY/MM Author: Description of the modification
 
 __author__ = "Vincent Rouvreau"
 __copyright__ = "Copyright (C) 2016 Inria"
diff --git a/src/python/gudhi/subsampling.pyx b/src/python/gudhi/subsampling.pyx
index e622ac99..e0cd1348 100644
--- a/src/python/gudhi/subsampling.pyx
+++ b/src/python/gudhi/subsampling.pyx
@@ -4,15 +4,14 @@ from libcpp.string cimport string
 from libcpp cimport bool
 import os
 
-""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
-    See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
-    Author(s):       Vincent Rouvreau
-
-    Copyright (C) 2016 Inria
-
-    Modification(s):
-      - YYYY/MM Author: Description of the modification
-"""
+# This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
+# See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
+# Author(s):       Vincent Rouvreau
+#
+# Copyright (C) 2016 Inria
+#
+# Modification(s):
+#   - YYYY/MM Author: Description of the modification
 
 __author__ = "Vincent Rouvreau"
 __copyright__ = "Copyright (C) 2016 Inria"
diff --git a/src/python/gudhi/tangential_complex.pyx b/src/python/gudhi/tangential_complex.pyx
index 9ef15567..b7678f4d 100644
--- a/src/python/gudhi/tangential_complex.pyx
+++ b/src/python/gudhi/tangential_complex.pyx
@@ -9,15 +9,14 @@ import os
 from gudhi.simplex_tree cimport *
 from gudhi.simplex_tree import SimplexTree
 
-""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
-    See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
-    Author(s):       Vincent Rouvreau
-
-    Copyright (C) 2016 Inria
-
-    Modification(s):
-      - YYYY/MM Author: Description of the modification
-"""
+# This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
+# See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
+# Author(s):       Vincent Rouvreau
+#
+# Copyright (C) 2016 Inria
+#
+# Modification(s):
+#   - YYYY/MM Author: Description of the modification
 
 __author__ = "Vincent Rouvreau"
 __copyright__ = "Copyright (C) 2016 Inria"
diff --git a/src/python/gudhi/wasserstein.py b/src/python/gudhi/wasserstein.py
index eba7c6d5..d8a3104c 100644
--- a/src/python/gudhi/wasserstein.py
+++ b/src/python/gudhi/wasserstein.py
@@ -5,15 +5,14 @@ try:
 except ImportError:
     print("POT (Python Optimal Transport) package is not installed. Try to run $ conda install -c conda-forge pot ; or $ pip install POT")
 
-""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
-    See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
-    Author(s):       Theo Lacombe
-
-    Copyright (C) 2019 Inria
-
-    Modification(s):
-      - YYYY/MM Author: Description of the modification
-"""
+# This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
+# See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
+# Author(s):       Theo Lacombe
+#
+# Copyright (C) 2019 Inria
+#
+# Modification(s):
+#   - YYYY/MM Author: Description of the modification
 
 def _proj_on_diag(X):
     '''
diff --git a/src/python/gudhi/witness_complex.pyx b/src/python/gudhi/witness_complex.pyx
index c19ccf2b..153fc615 100644
--- a/src/python/gudhi/witness_complex.pyx
+++ b/src/python/gudhi/witness_complex.pyx
@@ -6,15 +6,14 @@ from libc.stdint cimport intptr_t
 from gudhi.simplex_tree cimport *
 from gudhi.simplex_tree import SimplexTree
 
-""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
-    See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
-    Author(s):       Vincent Rouvreau
-
-    Copyright (C) 2016 Inria
-
-    Modification(s):
-      - YYYY/MM Author: Description of the modification
-"""
+# This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
+# See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
+# Author(s):       Vincent Rouvreau
+#
+# Copyright (C) 2016 Inria
+#
+# Modification(s):
+#   - YYYY/MM Author: Description of the modification
 
 __author__ = "Vincent Rouvreau"
 __copyright__ = "Copyright (C) 2016 Inria"