Add TBB compilation support and documentation

Add Matplotlib results in GUDHI persistence graphical tools



git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2112 636b058d-ea47-450e-bf9e-a15bfbe3eedb

Former-commit-id: e9fe1111d3a7d82c004a390cee77197221f117ec

1 files changed, 23 insertions, 2 deletions

diff --git a/src/cython/doc/persistence_graphical_tools_user.rst b/src/cython/doc/persistence_graphical_tools_user.rst
index 43c695bf..1a5195c5 100644
--- a/src/cython/doc/persistence_graphical_tools_user.rst
+++ b/src/cython/doc/persistence_graphical_tools_user.rst
@@ -17,6 +17,11 @@ This function is useful to show the color palette values of dimension:
     import gudhi
     gudhi.show_palette_values(alpha=1.0)
 
+.. plot::
+
+    import gudhi
+    gudhi.show_palette_values(alpha=1.0)
+
 Show persistence as a barcode
 -----------------------------
 
@@ -30,6 +35,13 @@ This function can display the persistence result as a barcode:
     diag = periodic_cc.persistence()
     gudhi.barcode_persistence(diag)
 
+.. plot::
+
+    import gudhi
+
+    periodic_cc = gudhi.PeriodicCubicalComplex(perseus_file='3d_torus.txt')
+    diag = periodic_cc.persistence()
+    gudhi.barcode_persistence(diag)
 
 Show persistence as a diagram
 -----------------------------
@@ -40,7 +52,16 @@ This function can display the persistence result as a diagram:
 
     import gudhi
     
-    alpha_complex = gudhi.AlphaComplex(off_file='tore3D_300.off')
-    simplex_tree = alpha_complex.create_simplex_tree()
+    rips_complex = gudhi.RipsComplex(off_file='tore3D_300.off', max_edge_length=2.0)
+    simplex_tree = rips_complex.create_simplex_tree(max_dimension=3)
+    diag = simplex_tree.persistence()
+    gudhi.diagram_persistence(diag)
+
+.. plot::
+
+    import gudhi
+
+    rips_complex = gudhi.RipsComplex(off_file='tore3D_300.off', max_edge_length=2.0)
+    simplex_tree = rips_complex.create_simplex_tree(max_dimension=3)
     diag = simplex_tree.persistence()
     gudhi.diagram_persistence(diag)