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author | ROUVREAU Vincent <vincent.rouvreau@inria.fr> | 2019-09-09 16:03:40 +0200 |
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committer | ROUVREAU Vincent <vincent.rouvreau@inria.fr> | 2019-09-09 16:03:40 +0200 |
commit | 68753b3c28321e28eedd5829c94234da84e25c8d (patch) | |
tree | 36003a30309b3203b41092ad4d7ee8fa78551452 /src/cython/example/functional_graph_induced_complex.py | |
parent | dcbdaa0dc00eb069d1a13575f22c0a2f7d63dcc8 (diff) |
Code review: rename cython as python (make target and directory
Diffstat (limited to 'src/cython/example/functional_graph_induced_complex.py')
-rwxr-xr-x | src/cython/example/functional_graph_induced_complex.py | 69 |
1 files changed, 0 insertions, 69 deletions
diff --git a/src/cython/example/functional_graph_induced_complex.py b/src/cython/example/functional_graph_induced_complex.py deleted file mode 100755 index 8b645040..00000000 --- a/src/cython/example/functional_graph_induced_complex.py +++ /dev/null @@ -1,69 +0,0 @@ -#!/usr/bin/env python - -import gudhi -import argparse - -""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT. - See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details. - Author(s): Vincent Rouvreau - - Copyright (C) 2018 Inria - - Modification(s): - - YYYY/MM Author: Description of the modification -""" - -__author__ = "Vincent Rouvreau" -__copyright__ = "Copyright (C) 2018 Inria" -__license__ = "MIT" - -parser = argparse.ArgumentParser( - description="Functional GIC " "from points read in a OFF file.", - epilog="Example: " - "example/functional_graph_induced_complex.py " - "-o ../data/points/COIL_database/lucky_cat.off " - "-f ../data/points/COIL_database/lucky_cat_PCA1" - "- Constructs the functional GIC with the " - "points from the given OFF and function files.", -) -parser.add_argument("-o", "--off-file", type=str, required=True) -parser.add_argument("-f", "--function-file", type=str, required=True) -parser.add_argument( - "-v", - "--verbose", - default=False, - action="store_true", - help="Flag for program verbosity", -) - -args = parser.parse_args() - -nerve_complex = gudhi.CoverComplex() -nerve_complex.set_verbose(args.verbose) - -if nerve_complex.read_point_cloud(args.off_file): - nerve_complex.set_type("GIC") - nerve_complex.set_color_from_file(args.function_file) - nerve_complex.set_function_from_file(args.function_file) - nerve_complex.set_graph_from_automatic_rips() - nerve_complex.set_automatic_resolution() - nerve_complex.set_gain() - nerve_complex.set_cover_from_function() - nerve_complex.find_simplices() - nerve_complex.plot_dot() - simplex_tree = nerve_complex.create_simplex_tree() - nerve_complex.compute_PD() - if args.verbose: - print("Iterator on functional GIC simplices") - result_str = ( - "Functional GIC is of dimension " - + repr(simplex_tree.dimension()) - + " - " - + repr(simplex_tree.num_simplices()) - + " simplices - " - + repr(simplex_tree.num_vertices()) - + " vertices." - ) - print(result_str) - for filtered_value in simplex_tree.get_filtration(): - print(filtered_value[0]) |