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authorROUVREAU Vincent <vincent.rouvreau@inria.fr>2019-09-09 16:03:40 +0200
committerROUVREAU Vincent <vincent.rouvreau@inria.fr>2019-09-09 16:03:40 +0200
commit68753b3c28321e28eedd5829c94234da84e25c8d (patch)
tree36003a30309b3203b41092ad4d7ee8fa78551452 /src/cython/example/functional_graph_induced_complex.py
parentdcbdaa0dc00eb069d1a13575f22c0a2f7d63dcc8 (diff)
Code review: rename cython as python (make target and directory
Diffstat (limited to 'src/cython/example/functional_graph_induced_complex.py')
-rwxr-xr-xsrc/cython/example/functional_graph_induced_complex.py69
1 files changed, 0 insertions, 69 deletions
diff --git a/src/cython/example/functional_graph_induced_complex.py b/src/cython/example/functional_graph_induced_complex.py
deleted file mode 100755
index 8b645040..00000000
--- a/src/cython/example/functional_graph_induced_complex.py
+++ /dev/null
@@ -1,69 +0,0 @@
-#!/usr/bin/env python
-
-import gudhi
-import argparse
-
-""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
- See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
- Author(s): Vincent Rouvreau
-
- Copyright (C) 2018 Inria
-
- Modification(s):
- - YYYY/MM Author: Description of the modification
-"""
-
-__author__ = "Vincent Rouvreau"
-__copyright__ = "Copyright (C) 2018 Inria"
-__license__ = "MIT"
-
-parser = argparse.ArgumentParser(
- description="Functional GIC " "from points read in a OFF file.",
- epilog="Example: "
- "example/functional_graph_induced_complex.py "
- "-o ../data/points/COIL_database/lucky_cat.off "
- "-f ../data/points/COIL_database/lucky_cat_PCA1"
- "- Constructs the functional GIC with the "
- "points from the given OFF and function files.",
-)
-parser.add_argument("-o", "--off-file", type=str, required=True)
-parser.add_argument("-f", "--function-file", type=str, required=True)
-parser.add_argument(
- "-v",
- "--verbose",
- default=False,
- action="store_true",
- help="Flag for program verbosity",
-)
-
-args = parser.parse_args()
-
-nerve_complex = gudhi.CoverComplex()
-nerve_complex.set_verbose(args.verbose)
-
-if nerve_complex.read_point_cloud(args.off_file):
- nerve_complex.set_type("GIC")
- nerve_complex.set_color_from_file(args.function_file)
- nerve_complex.set_function_from_file(args.function_file)
- nerve_complex.set_graph_from_automatic_rips()
- nerve_complex.set_automatic_resolution()
- nerve_complex.set_gain()
- nerve_complex.set_cover_from_function()
- nerve_complex.find_simplices()
- nerve_complex.plot_dot()
- simplex_tree = nerve_complex.create_simplex_tree()
- nerve_complex.compute_PD()
- if args.verbose:
- print("Iterator on functional GIC simplices")
- result_str = (
- "Functional GIC is of dimension "
- + repr(simplex_tree.dimension())
- + " - "
- + repr(simplex_tree.num_simplices())
- + " simplices - "
- + repr(simplex_tree.num_vertices())
- + " vertices."
- )
- print(result_str)
- for filtered_value in simplex_tree.get_filtration():
- print(filtered_value[0])