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Diffstat (limited to 'src/Persistence_representations/utilities/persistence_intervals/compute_bottleneck_distance.cpp')
-rw-r--r-- | src/Persistence_representations/utilities/persistence_intervals/compute_bottleneck_distance.cpp | 95 |
1 files changed, 95 insertions, 0 deletions
diff --git a/src/Persistence_representations/utilities/persistence_intervals/compute_bottleneck_distance.cpp b/src/Persistence_representations/utilities/persistence_intervals/compute_bottleneck_distance.cpp new file mode 100644 index 00000000..0b1b526d --- /dev/null +++ b/src/Persistence_representations/utilities/persistence_intervals/compute_bottleneck_distance.cpp @@ -0,0 +1,95 @@ +/* This file is part of the Gudhi Library. The Gudhi library + * (Geometric Understanding in Higher Dimensions) is a generic C++ + * library for computational topology. + * + * Author(s): Pawel Dlotko + * + * Copyright (C) 2016 INRIA (France) + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as published by + * the Free Software Foundation, either version 3 of the License, or + * (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with this program. If not, see <http://www.gnu.org/licenses/>. + */ + +#include <gudhi/Persistence_intervals_with_distances.h> +#include <gudhi/read_persistence_from_file.h> + +#include <iostream> +#include <sstream> +#include <limits> +#include <vector> + +using Persistence_intervals_with_distances = Gudhi::Persistence_representations::Persistence_intervals_with_distances; + +int main(int argc, char** argv) { + std::cout << "This program compute the bottleneck distance of persistence diagrams stored in a files. \n"; + std::cout << "The first parameter of the program is the dimension of persistence to be used to construct persistence " + "landscapes. If your file contains "; + std::cout << "the information about dimension of persistence pairs, please provide here the dimension of persistence " + "pairs you want to use. If your input files consist only "; + std::cout << "of birth-death pairs, please set this first parameter to -1 \n"; + std::cout << "The remaining parameters of this programs are names of files with persistence diagrams.\n"; + + if (argc < 3) { + std::cout << "Wrong number of parameters, the program will now terminate \n"; + return 1; + } + + int dim = atoi(argv[1]); + unsigned dimension = std::numeric_limits<unsigned>::max(); + if (dim >= 0) { + dimension = (unsigned)dim; + } + + std::vector<const char*> filenames; + for (int i = 2; i < argc; ++i) { + filenames.push_back(argv[i]); + } + + // reading the persistence intervals: + std::vector<Persistence_intervals_with_distances> persistence_intervals; + for (size_t i = 0; i != filenames.size(); ++i) { + Persistence_intervals_with_distances pers(filenames[i], dimension); + persistence_intervals.push_back(pers); + } + + // and now we will compute the scalar product of landscapes. + + // first we prepare an array: + std::vector<std::vector<double> > distance(filenames.size()); + for (size_t i = 0; i != filenames.size(); ++i) { + std::vector<double> v(filenames.size(), 0); + distance[i] = v; + } + + // and now we can compute the distances: + for (size_t i = 0; i != persistence_intervals.size(); ++i) { + for (size_t j = i + 1; j != persistence_intervals.size(); ++j) { + distance[i][j] = distance[j][i] = persistence_intervals[i].distance(persistence_intervals[j]); + } + } + + // and now output the result to the screen and a file: + std::ofstream out; + out.open("distance"); + for (size_t i = 0; i != distance.size(); ++i) { + for (size_t j = 0; j != distance.size(); ++j) { + std::cout << distance[i][j] << " "; + out << distance[i][j] << " "; + } + std::cout << std::endl; + out << std::endl; + } + out.close(); + + return 0; +} |