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Diffstat (limited to 'src/Witness_complex/example/witness_complex_from_file.cpp')
-rw-r--r-- | src/Witness_complex/example/witness_complex_from_file.cpp | 83 |
1 files changed, 83 insertions, 0 deletions
diff --git a/src/Witness_complex/example/witness_complex_from_file.cpp b/src/Witness_complex/example/witness_complex_from_file.cpp new file mode 100644 index 00000000..bb641b3c --- /dev/null +++ b/src/Witness_complex/example/witness_complex_from_file.cpp @@ -0,0 +1,83 @@ +/* This file is part of the Gudhi Library. The Gudhi library + * (Geometric Understanding in Higher Dimensions) is a generic C++ + * library for computational topology. + * + * Author(s): Siargey Kachanovich + * + * Copyright (C) 2015 INRIA Sophia Antipolis-Méditerranée (France) + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as published by + * the Free Software Foundation, either version 3 of the License, or + * (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with this program. If not, see <http://www.gnu.org/licenses/>. + */ + +#include <sys/types.h> +#include <sys/stat.h> + +#include <gudhi/Points_off_io.h> +#include <gudhi/Simplex_tree.h> +#include <gudhi/Witness_complex.h> +#include <gudhi/Construct_closest_landmark_table.h> +#include <gudhi/pick_n_random_points.h> +#include <gudhi/reader_utils.h> + +#include <iostream> +#include <fstream> +#include <ctime> +#include <string> +#include <vector> + +typedef std::vector< Vertex_handle > typeVectorVertex; +typedef std::vector< std::vector <double> > Point_Vector; + +int main(int argc, char * const argv[]) { + if (argc != 3) { + std::cerr << "Usage: " << argv[0] + << " path_to_point_file.off nbL \n"; + return 0; + } + + std::string off_file_name = argv[1]; + int nbL = atoi(argv[2]); + clock_t start, end; + + // Construct the Simplex Tree + Gudhi::Simplex_tree<> simplex_tree; + + // Read the OFF file (input file name given as parameter) and triangulate points + Gudhi::Points_off_reader<std::vector <double>> off_reader(off_file_name); + // Check the read operation was correct + if (!off_reader.is_valid()) { + std::cerr << "Unable to read file " << off_file_name << std::endl; + } + // Read the point file + Point_Vector point_vector = off_reader.get_point_cloud(); + std::cout << "Successfully read " << point_vector.size() << " points.\n"; + std::cout << "Ambient dimension is " << point_vector[0].size() << ".\n"; + + // Choose landmarks + start = clock(); + std::vector<std::vector< int > > knn; + Point_Vector landmarks; + Gudhi::subsampling::pick_n_random_points(point_vector, 100, std::back_inserter(landmarks)); + Gudhi::witness_complex::construct_closest_landmark_table(point_vector, landmarks, knn); + end = clock(); + std::cout << "Landmark choice for " << nbL << " landmarks took " + << static_cast<double>(end - start) / CLOCKS_PER_SEC << " s. \n"; + + // Compute witness complex + start = clock(); + Gudhi::witness_complex::witness_complex(knn, nbL, point_vector[0].size(), simplex_tree); + end = clock(); + std::cout << "Witness complex took " + << static_cast<double>(end - start) / CLOCKS_PER_SEC << " s. \n"; +} |