17 files changed, 46 insertions, 116 deletions
diff --git a/src/Witness_complex/concept/SimplicialComplexForWitness.h b/src/Witness_complex/concept/SimplicialComplexForWitness.h
index d78cc83f..8b85f4e4 100644
--- a/src/Witness_complex/concept/SimplicialComplexForWitness.h
+++ b/src/Witness_complex/concept/SimplicialComplexForWitness.h
@@ -4,7 +4,7 @@
  *
  *    Author(s):       Siargey Kachanovich
  *
- *    Copyright (C) 2014  INRIA Sophia Antipolis-Méditerranée (France)
+ *    Copyright (C) 2014 Inria
  *
  *    This program is free software: you can redistribute it and/or modify
  *    it under the terms of the GNU General Public License as published by
diff --git a/src/Witness_complex/doc/COPYRIGHT b/src/Witness_complex/doc/COPYRIGHT
index 7d032c87..25a700cf 100644
--- a/src/Witness_complex/doc/COPYRIGHT
+++ b/src/Witness_complex/doc/COPYRIGHT
@@ -4,7 +4,7 @@ computational topology.
 
 Author(s):       Siargey Kachanovich
 
-Copyright (C) 2015  INRIA
+Copyright (C) 2015 Inria
 
 This program is free software: you can redistribute it and/or modify it under
 the terms of the GNU General Public License as published by the Free Software
diff --git a/src/Witness_complex/doc/Witness_complex_doc.h b/src/Witness_complex/doc/Witness_complex_doc.h
index 5d5c0735..62203054 100644
--- a/src/Witness_complex/doc/Witness_complex_doc.h
+++ b/src/Witness_complex/doc/Witness_complex_doc.h
@@ -117,9 +117,6 @@ int main(int argc, char * const argv[]) {
 
    \include Witness_complex/example_nearest_landmark_table.cpp
 
-   \copyright GNU General Public License v3.
-
-
  */
 
 #endif  // WITNESS_COMPLEX_DOC_H_
diff --git a/src/Witness_complex/example/example_nearest_landmark_table.cpp b/src/Witness_complex/example/example_nearest_landmark_table.cpp
index b8594212..acaf7c54 100644
--- a/src/Witness_complex/example/example_nearest_landmark_table.cpp
+++ b/src/Witness_complex/example/example_nearest_landmark_table.cpp
@@ -1,25 +1,3 @@
-/*    This file is part of the Gudhi Library. The Gudhi library
- *    (Geometric Understanding in Higher Dimensions) is a generic C++
- *    library for computational topology.
- *
- *    Author(s):       Siargey Kachanovich
- *
- *    Copyright (C) 2016  INRIA (France)
- *
- *    This program is free software: you can redistribute it and/or modify
- *    it under the terms of the GNU General Public License as published by
- *    the Free Software Foundation, either version 3 of the License, or
- *    (at your option) any later version.
- *
- *    This program is distributed in the hope that it will be useful,
- *    but WITHOUT ANY WARRANTY; without even the implied warranty of
- *    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- *    GNU General Public License for more details.
- *
- *    You should have received a copy of the GNU General Public License
- *    along with this program.  If not, see <http://www.gnu.org/licenses/>.
- */
-
 #define BOOST_PARAMETER_MAX_ARITY 12
 
 #include <gudhi/Simplex_tree.h>
diff --git a/src/Witness_complex/example/example_strong_witness_complex_off.cpp b/src/Witness_complex/example/example_strong_witness_complex_off.cpp
index 346bef6d..19f73836 100644
--- a/src/Witness_complex/example/example_strong_witness_complex_off.cpp
+++ b/src/Witness_complex/example/example_strong_witness_complex_off.cpp
@@ -1,25 +1,3 @@
-/*    This file is part of the Gudhi Library. The Gudhi library
- *    (Geometric Understanding in Higher Dimensions) is a generic C++
- *    library for computational topology.
- *
- *    Author(s):       Siargey Kachanovich
- *
- *    Copyright (C) 2016  INRIA (France)
- *
- *    This program is free software: you can redistribute it and/or modify
- *    it under the terms of the GNU General Public License as published by
- *    the Free Software Foundation, either version 3 of the License, or
- *    (at your option) any later version.
- *
- *    This program is distributed in the hope that it will be useful,
- *    but WITHOUT ANY WARRANTY; without even the implied warranty of
- *    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- *    GNU General Public License for more details.
- *
- *    You should have received a copy of the GNU General Public License
- *    along with this program.  If not, see <http://www.gnu.org/licenses/>.
- */
-
 #include <gudhi/Simplex_tree.h>
 #include <gudhi/Euclidean_strong_witness_complex.h>
 #include <gudhi/pick_n_random_points.h>
diff --git a/src/Witness_complex/example/example_witness_complex_sphere.cpp b/src/Witness_complex/example/example_witness_complex_sphere.cpp
index a6e9b11a..9e3c972d 100644
--- a/src/Witness_complex/example/example_witness_complex_sphere.cpp
+++ b/src/Witness_complex/example/example_witness_complex_sphere.cpp
@@ -1,25 +1,3 @@
-/*    This file is part of the Gudhi Library. The Gudhi library
- *    (Geometric Understanding in Higher Dimensions) is a generic C++
- *    library for computational topology.
- *
- *    Author(s):       Siargey Kachanovich
- *
- *    Copyright (C) 2016  INRIA (France)
- *
- *    This program is free software: you can redistribute it and/or modify
- *    it under the terms of the GNU General Public License as published by
- *    the Free Software Foundation, either version 3 of the License, or
- *    (at your option) any later version.
- *
- *    This program is distributed in the hope that it will be useful,
- *    but WITHOUT ANY WARRANTY; without even the implied warranty of
- *    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- *    GNU General Public License for more details.
- *
- *    You should have received a copy of the GNU General Public License
- *    along with this program.  If not, see <http://www.gnu.org/licenses/>.
- */
-
 #define BOOST_PARAMETER_MAX_ARITY 12
 
 #include <gudhi/Simplex_tree.h>
diff --git a/src/Witness_complex/example/generators.h b/src/Witness_complex/example/generators.h
index 7df43db5..81566824 100644
--- a/src/Witness_complex/example/generators.h
+++ b/src/Witness_complex/example/generators.h
@@ -4,7 +4,7 @@
  *
  *    Author(s):       Siargey Kachanovich
  *
- *    Copyright (C) 2015  INRIA Sophia Antipolis-Méditerranée (France)
+ *    Copyright (C) 2015 Inria
  *
  *    This program is free software: you can redistribute it and/or modify
  *    it under the terms of the GNU General Public License as published by
diff --git a/src/Witness_complex/include/gudhi/Active_witness/Active_witness.h b/src/Witness_complex/include/gudhi/Active_witness/Active_witness.h
index d41a6811..8cb8662b 100644
--- a/src/Witness_complex/include/gudhi/Active_witness/Active_witness.h
+++ b/src/Witness_complex/include/gudhi/Active_witness/Active_witness.h
@@ -4,7 +4,7 @@
  *
  *    Author(s):       Siargey Kachanovich
  *
- *    Copyright (C) 2016  INRIA (France)
+ *    Copyright (C) 2016 Inria
  *
  *    This program is free software: you can redistribute it and/or modify
  *    it under the terms of the GNU General Public License as published by
diff --git a/src/Witness_complex/include/gudhi/Active_witness/Active_witness_iterator.h b/src/Witness_complex/include/gudhi/Active_witness/Active_witness_iterator.h
index 0a05173a..10d2ec52 100644
--- a/src/Witness_complex/include/gudhi/Active_witness/Active_witness_iterator.h
+++ b/src/Witness_complex/include/gudhi/Active_witness/Active_witness_iterator.h
@@ -4,7 +4,7 @@
  *
  *    Author(s):       Siargey Kachanovich
  *
- *    Copyright (C) 2016  INRIA (France)
+ *    Copyright (C) 2016 Inria
  *
  *    This program is free software: you can redistribute it and/or modify
  *    it under the terms of the GNU General Public License as published by
diff --git a/src/Witness_complex/include/gudhi/Euclidean_strong_witness_complex.h b/src/Witness_complex/include/gudhi/Euclidean_strong_witness_complex.h
index 4f3cef4f..ea97cd3f 100644
--- a/src/Witness_complex/include/gudhi/Euclidean_strong_witness_complex.h
+++ b/src/Witness_complex/include/gudhi/Euclidean_strong_witness_complex.h
@@ -4,7 +4,7 @@
  *
  *    Author(s):       Siargey Kachanovich
  *
- *    Copyright (C) 2015  INRIA (France)
+ *    Copyright (C) 2015 Inria
  *
  *    This program is free software: you can redistribute it and/or modify
  *    it under the terms of the GNU General Public License as published by
diff --git a/src/Witness_complex/include/gudhi/Euclidean_witness_complex.h b/src/Witness_complex/include/gudhi/Euclidean_witness_complex.h
index ff8bb139..1dacefa5 100644
--- a/src/Witness_complex/include/gudhi/Euclidean_witness_complex.h
+++ b/src/Witness_complex/include/gudhi/Euclidean_witness_complex.h
@@ -4,7 +4,7 @@
  *
  *    Author(s):       Siargey Kachanovich
  *
- *    Copyright (C) 2015  INRIA (France)
+ *    Copyright (C) 2015 Inria
  *
  *    This program is free software: you can redistribute it and/or modify
  *    it under the terms of the GNU General Public License as published by
diff --git a/src/Witness_complex/include/gudhi/Strong_witness_complex.h b/src/Witness_complex/include/gudhi/Strong_witness_complex.h
index b3d00b11..fd6b3f38 100644
--- a/src/Witness_complex/include/gudhi/Strong_witness_complex.h
+++ b/src/Witness_complex/include/gudhi/Strong_witness_complex.h
@@ -4,7 +4,7 @@
  *
  *    Author(s):       Siargey Kachanovich
  *
- *    Copyright (C) 2015  INRIA (France)
+ *    Copyright (C) 2015 Inria
  *
  *    This program is free software: you can redistribute it and/or modify
  *    it under the terms of the GNU General Public License as published by
diff --git a/src/Witness_complex/include/gudhi/Witness_complex.h b/src/Witness_complex/include/gudhi/Witness_complex.h
index 53c38520..67885258 100644
--- a/src/Witness_complex/include/gudhi/Witness_complex.h
+++ b/src/Witness_complex/include/gudhi/Witness_complex.h
@@ -4,7 +4,7 @@
  *
  *    Author(s):       Siargey Kachanovich
  *
- *    Copyright (C) 2015  INRIA (France)
+ *    Copyright (C) 2015 Inria
  *
  *    This program is free software: you can redistribute it and/or modify
  *    it under the terms of the GNU General Public License as published by
diff --git a/src/Witness_complex/include/gudhi/Witness_complex/all_faces_in.h b/src/Witness_complex/include/gudhi/Witness_complex/all_faces_in.h
index b68d75a1..c7b732b9 100644
--- a/src/Witness_complex/include/gudhi/Witness_complex/all_faces_in.h
+++ b/src/Witness_complex/include/gudhi/Witness_complex/all_faces_in.h
@@ -4,7 +4,7 @@
  *
  *    Author(s):       Siargey Kachanovich
  *
- *    Copyright (C) 2015  INRIA (France)
+ *    Copyright (C) 2015 Inria
  *
  *    This program is free software: you can redistribute it and/or modify
  *    it under the terms of the GNU General Public License as published by
diff --git a/src/Witness_complex/utilities/strong_witness_persistence.cpp b/src/Witness_complex/utilities/strong_witness_persistence.cpp
index 2fba631b..9d23df74 100644
--- a/src/Witness_complex/utilities/strong_witness_persistence.cpp
+++ b/src/Witness_complex/utilities/strong_witness_persistence.cpp
@@ -4,7 +4,7 @@
  *
  *    Author(s):       Siargey Kachanovich
  *
- *    Copyright (C) 2016  INRIA (France)
+ *    Copyright (C) 2016 Inria
  *
  *    This program is free software: you can redistribute it and/or modify
  *    it under the terms of the GNU General Public License as published by
diff --git a/src/Witness_complex/utilities/weak_witness_persistence.cpp b/src/Witness_complex/utilities/weak_witness_persistence.cpp
index 23fa93aa..1315d2ba 100644
--- a/src/Witness_complex/utilities/weak_witness_persistence.cpp
+++ b/src/Witness_complex/utilities/weak_witness_persistence.cpp
@@ -4,7 +4,7 @@
  *
  *    Author(s):       Siargey Kachanovich
  *
- *    Copyright (C) 2016  INRIA (France)
+ *    Copyright (C) 2016 Inria
  *
  *    This program is free software: you can redistribute it and/or modify
  *    it under the terms of the GNU General Public License as published by
diff --git a/src/Witness_complex/utilities/README b/src/Witness_complex/utilities/witnesscomplex.md
index 1141033e..da453cce 100644
--- a/src/Witness_complex/utilities/README
+++ b/src/Witness_complex/utilities/witnesscomplex.md
@@ -1,18 +1,31 @@
-# Witness_complex #
+---
+layout: page
+title: "Witness complex"
+meta_title: "Witness complex"
+teaser: ""
+permalink: /witnesscomplex/
+---
+{::comment}
+Leave the lines above as it is required by the web site generator 'Jekyll'
+{:/comment}
 
-For more details about the witness complex, please read the [user manual of the package](http://gudhi.gforge.inria.fr/doc/latest/group__witness__complex.html).
 
-## `weak_witness_persistence` ##
-This program computes the persistent homology with coefficient field *Z/pZ* of a Weak witness complex defined on a set of input points. The output diagram contains one bar per line, written with the convention:
+For more details about the witness complex, please read the [user manual of the package](/doc/latest/group__witness__complex.html).
+
+## weak_witness_persistence ##
+This program computes the persistent homology with coefficient field *Z/pZ* of a Weak witness complex defined on a set of input points.
+The output diagram contains one bar per line, written with the convention:
 
 `p dim birth death`
 
-where `dim` is the dimension of the homological feature, `birth` and `death` are respectively the birth and death of the feature, and `p` is the characteristic of the field *Z/pZ* used for homology coefficients.
+where `dim` is the dimension of the homological feature, `birth` and `death` are respectively the birth and death of the feature,
+and `p` is the characteristic of the field *Z/pZ* used for homology coefficients.
+
+**Usage**
 
-*Usage*
 `weak_witness_persistence [options] <OFF input file>`
 
-*Allowed options*
+**Allowed options**
 
 * `-h [ --help ]` Produce help message
 * `-l [ --landmarks ]` Number of landmarks to choose from the point cloud.
@@ -22,33 +35,28 @@ where `dim` is the dimension of the homological feature, `birth` and `death` are
 * `-m [ --min-persistence ]` (default = 0) Minimal lifetime of homology feature to be recorded. Enter a negative value to see zero length intervals.
 * `-d [ --cpx-dimension ]` (default = 2147483647) Maximal dimension of the weak witness complex we want to compute.
 
-*Example*
-`weak_witness_persistence data/points/tore3D_1307.off -l 20 -a 0.5 -m 0.006`
+**Example**
 
-outputs:
-```
-Successfully read 1307 points.
-Ambient dimension is 3.
-The complex contains 732 simplices and has dimension 8 
-11  0 0 inf 
-11  1 0 inf 
-11  2 0.0275251 0.0534586 
-11  1 0 0.0239952 
-```
+`weak_witness_persistence data/points/tore3D_1307.off -l 20 -a 0.5 -m 0.006`
 
 N.B.: output is random as the 20 landmarks are chosen randomly.
 
-## `strong_witness_persistence` ##
-This program computes the persistent homology with coefficient field *Z/pZ* of a Strong witness complex defined on a set of input points. The output diagram contains one bar per line, written with the convention:
+
+## strong_witness_persistence ##
+
+This program computes the persistent homology with coefficient field *Z/pZ* of a Strong witness complex defined on a set of input points.
+The output diagram contains one bar per line, written with the convention:
 
 `p dim birth death`
 
-where `dim` is the dimension of the homological feature, `birth` and `death` are respectively the birth and death of the feature, and `p` is the characteristic of the field *Z/pZ* used for homology coefficients.
+where `dim` is the dimension of the homological feature, `birth` and `death` are respectively the birth and death of the feature,
+and `p` is the characteristic of the field *Z/pZ* used for homology coefficients.
+
+**Usage**
 
-*Usage*
 `strong_witness_persistence [options] <OFF input file>`
 
-*Allowed options*
+**Allowed options**
 
 * `-h [ --help ]` Produce help message
 * `-l [ --landmarks ]` Number of landmarks to choose from the point cloud.
@@ -58,17 +66,8 @@ where `dim` is the dimension of the homological feature, `birth` and `death` are
 * `-m [ --min-persistence ]` (default = 0) Minimal lifetime of homology feature to be recorded. Enter a negative value to see zero length intervals.
 * `-d [ --cpx-dimension ]` (default = 2147483647) Maximal dimension of the weak witness complex we want to compute.
 
-*Example*
-`strong_witness_persistence data/points/tore3D_1307.off -l 20 -a 0.5 -m 0.06`
+**Example**
 
-outputs:
-```
-Successfully read 1307 points.
-Ambient dimension is 3.
-The complex contains 1836 simplices and has dimension 8 
-11  0 0 inf 
-11  1 0.00674748 inf 
-11  2 0.0937751 0.235354 
-```
+`strong_witness_persistence data/points/tore3D_1307.off -l 20 -a 0.5 -m 0.06`
 
 N.B.: output is random as the 20 landmarks are chosen randomly.