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2020-07-01Doc review: remove also this \fnROUVREAU Vincent
2020-04-28Code and doc review fixROUVREAU Vincent
2020-02-11Code review: roll back to cout for output utilitiesROUVREAU Vincent
2020-01-27Code review: Use std::clog instead of std::coutROUVREAU Vincent
2020-01-13Review all cout and cerr. cerr is reserved for warnings/error and cout for ↵ROUVREAU Vincent
traces
2019-12-03Fix #118 - protect some bottleneck testsROUVREAU Vincent
2019-11-22Error message in #10 fix was not correct, bad copy/pasteROUVREAU Vincent
2019-11-21Code review : review races for read_persistence_intervals_in_dimension functionROUVREAU Vincent
2019-11-20Code review : rollback array initROUVREAU Vincent
2019-11-20Merge branch 'master' into persistence_graphical_tool_improvementsROUVREAU Vincent
2019-10-24Add debug traces for read_persistence_intervals_and_dimensionROUVREAU Vincent
2019-10-17Include <cmath> for std::fabsSiargey Kachanovich
2019-08-20Fix issue #10 and modify main and installation documentations accordinglyROUVREAU Vincent
2019-08-14Fix #35 Modify Copyright as GUDHI is not only a C++ libraryROUVREAU Vincent
2019-06-13Change CopyrightROUVREAU Vincent
2019-06-05Fix #20: Add OFF section in file format and all documents target to it ↵ROUVREAU Vincent
instead of geomview.org documentation. Modify data/points/alphacomplexdoc.off in dimension 3 to be used as an example for OFF section in file format.
2019-01-24Fix persistence_from_file example when the file is not conform.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@4075 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9a1b15f6d0b02084babd70ce8001cd90b6c35c85
2019-01-17adjacency lists can be directed, undirected or bidirectional for Simplex ↵vrouvrea
tree insert_graph method Use of directed adjacency lists to fasten computation and use less memory git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/adjacency_list_direction_improvement@4061 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 839fabc15398ce590d09806bd783cd656029f3c1
2018-08-29weighted/non-weighted and periodic/non-periodic with fast/exact are working ↵vrouvrea
well (test suites and examples) Still utilities to rewrite Modify GUDHI_TEST_FLOAT_EQUALITY_CHECK as one test was reaching exactly std::numeric_limits<FloatingType>::epsilon() git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3842 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bbd17f90644b4b8444d480ca95da0909e8fe5048
2018-06-13Fix cppcheck issuesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3601 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 44cc04b1609d3b3d40382fd02d4fe15e5ba0159f
2018-04-27Merge Copyright clarificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cechcomplex_vincent@3402 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c24c2226a76df7a6a95d2531e98850c7c19580e1
2018-04-26Fix Copyrightsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/copyright_clarification_vincent@3400 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ff348beedf92656c6913c2a1df983b5804b33988
2018-04-10Doc review : Gudhi::Proximity_graph and Gudhi::Radius_distance must be links ↵vrouvrea
in the doc git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cechcomplex_vincent@3370 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fc57faf137316ae07e06491482e0756fbacaf479
2018-04-04Fix max issue on MacOS clangvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3337 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 89cd68f9abd58a43553d9ca2d54e776374557f26
2018-04-03Modify the correct signature to operator== and !=vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3333 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 936c6abcb75e16cc569368e45e87feaa409e0890
2018-04-03Try to fix operator< for std::sort on CentOSvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3332 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: caaeb02c38a8adc8c09321e534f9b73181450acf
2018-04-03Add explicit operator< to fix sort bugvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3331 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d1a70cdbae311f1376e24d61568471d81b7f0df1
2018-04-03Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_from_correlation_matrix@3327 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 85b28237989b93fb4b5f8629a7f28bdb51b9a1b1
2018-04-03Add warnings for rips persistence from correlation matrix (points under the ↵vrouvrea
diagonal). Use range instead of vector in write_persistence_intervals_to_stream git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_from_correlation_matrix@3326 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ea0fdc32c91f1927c5a9f2a3864360895ce8128a
2018-03-22code review : use std::begin, std::end and boost::sizevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cechcomplex_vincent@3305 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e59699bc13ae66476001ef5f648759fef68ee76a
2018-03-22code review : Rename Radius_distance Minimal_enclosing_ball_radiusvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cechcomplex_vincent@3304 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 204aa7a7098773b2d290e35a12a1c92449743d7d
2018-03-22Move Miniball in gudhivrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cechcomplex_vincent@3302 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 736e5c33a9593e4dfb5b19ddc745ab9852d71b40
2018-03-22Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cechcomplex_vincent@3301 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 148bef8bb2b7183e9535135b25a6ad369a42f79b
2018-03-05Fix doc and testsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cechcomplex_vincent@3262 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c76eb981f5960938221aa2498cb87b0707391733
2018-02-22Fix Cech with radius distancevrouvrea
Add a meta generation script for off_file_generator git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cechcomplex_vincent@3256 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fb13baa124ddc97c0dc61835ab0c72595d666155
2018-02-13Add documentation tests for example_vector_double_points_off_readervrouvrea
Fix Marc's comments about reader git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/offreaderfix_vincent@3243 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7dfb928c064c1286c1903cb91600ebace7a8fd47
2018-02-08Fixed comments from Marc and Vincent.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_from_correlation_matrix@3234 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8b5e08c38cd05512ba8b2824f13a62d35f39bac3
2018-02-08random commit.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_from_correlation_matrix@3233 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9a3ccdd8a000bd3fd79bab61b35e50bd707cfb29
2018-02-08The file has been removed.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_from_correlation_matrix@3232 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4e6e6b2c1939506e19bb76a7bb507f869160577b
2018-02-08Commit to remove one file.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_from_correlation_matrix@3231 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5795ef0322c1ba328e8bee068009a27f18b7224c
2018-02-02Merge last trunk modificatvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_from_correlation_matrix@3212 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ea6296547b67ad82f5983d4309493e9131da7dd0
2018-01-22Fix cpplintvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3149 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e1cc797f8c24015168a1f84430666e8a156ababa
2018-01-16Merge of branch misc-glissevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3135 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7b678c4b6accf796920ca9582fa57e13f5f1f8cb
2018-01-08Merge of branch persistence_representation_integration_cmake_improvementvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3117 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 673143bd16e06d990aeb104a506cfd71f91a8717
2017-12-22Cleanups in Euclidean_distance.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@3102 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 06a14b11149e9c7265b8a3427404a9a0991d51aa
2017-12-19Add a function for unitary tests to test floating point values equality w/wo ↵vrouvrea
epsilon values git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration_cmake_improvement@3083 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 835037fd6efea4fbfc9a494df3015186232388bf
2017-12-18Boost minimal version is now 1.56.0vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3081 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c3f409eb75ecb7a7f08735a99549c15662b7e5fe
2017-12-06Merge C++ version of persistence representationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration_bis@3043 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6421c7cbe670fad1a8900ccc0ea6ff32297dd5e7
2017-12-02Cleanup checks in Simplex_treeglisse
Rewrite GUDHi_CHECK so we don't get nasty surprises with: if(cond) GUDHI_CHECK(...) else ... where the else would have been matched with the if in GUDHI_CHECK. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST-glisse@3010 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a1385540710d0079567b7e4566766bd0da53c584
2017-11-22Merge graph_expansion_blocker fix from cech_complex branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2932 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c6397609dbf92cad0fdd6c0fc5365b96657edec9
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