updated benchmark

12 files changed, 1233 insertions, 4 deletions

diff --git a/benchmarks/sphere_3_192/dionysus.dim_1.out.txt b/benchmarks/sphere_3_192/dionysus.dim_1.out.txt
new file mode 100644
index 0000000..0e8cd4d
--- /dev/null
+++ b/benchmarks/sphere_3_192/dionysus.dim_1.out.txt
@@ -0,0 +1,27 @@
+Boundary matrix: 
+Cocycles:        *.ccl
+Vertices:        
+Diagram:         
+Simplex vector generated, size: 1179808
+
+0%   10   20   30   40   50   60   70   80   90   100%
+|----|----|----|----|----|----|----|----|----|----|
+***************************************************
+Rips timer : Elapsed time [4.19] seconds
+Persistence timer : Elapsed time [2.38] seconds
+Total timer : Elapsed time [7.45] seconds
+        7.54 real         7.46 user         0.06 sys
+ 142344192  maximum resident set size
+         0  average shared memory size
+         0  average unshared data size
+         0  average unshared stack size
+     34700  page reclaims
+        72  page faults
+         0  swaps
+         5  block input operations
+         0  block output operations
+         0  messages sent
+         0  messages received
+         0  signals received
+         7  voluntary context switches
+       212  involuntary context switches
diff --git a/benchmarks/sphere_3_192/dionysus.dim_2.out.txt b/benchmarks/sphere_3_192/dionysus.dim_2.out.txt
new file mode 100644
index 0000000..3495e23
--- /dev/null
+++ b/benchmarks/sphere_3_192/dionysus.dim_2.out.txt
@@ -0,0 +1,27 @@
+Boundary matrix: 
+Cocycles:        *.ccl
+Vertices:        
+Diagram:         
+Simplex vector generated, size: 56050288
+
+0%   10   20   30   40   50   60   70   80   90   100%
+|----|----|----|----|----|----|----|----|----|----|
+***************************************************
+Rips timer : Elapsed time [256.35] seconds
+Persistence timer : Elapsed time [205.61] seconds
+Total timer : Elapsed time [528.91] seconds
+      532.99 real       527.96 user         4.95 sys
+3376783360  maximum resident set size
+         0  average shared memory size
+         0  average unshared data size
+         0  average unshared stack size
+   1430837  page reclaims
+         0  page faults
+         0  swaps
+         0  block input operations
+         0  block output operations
+         0  messages sent
+         0  messages received
+         0  signals received
+         0  voluntary context switches
+     17326  involuntary context switches
diff --git a/benchmarks/sphere_3_192/dipha.dim_1.out.txt b/benchmarks/sphere_3_192/dipha.dim_1.out.txt
new file mode 100644
index 0000000..133977f
--- /dev/null
+++ b/benchmarks/sphere_3_192/dipha.dim_1.out.txt
@@ -0,0 +1,55 @@
+
+Input filename: 
+/Users/uli/Bitbucket/phat-paper/benchmark/dipha/sphere_3_192.complex
+
+upper_dim: 2
+
+Number of processes used: 
+1
+
+Detailed information for rank 0:
+       time    prior mem     peak mem   bytes recv
+       0.0s         3 MB         4 MB         0 MB   complex.load_binary( input_filename, upper_dim );
+
+Number of cells in input: 
+1179808
+       0.2s         4 MB        40 MB         0 MB   get_filtration_to_cell_map( complex, dualize, filtration_to_cell_map );
+       0.1s        40 MB       127 MB        18 MB   get_cell_to_filtration_map( complex.get_num_cells(), filtration_to_cell_map, cell_to_filtration_map );
+       0.0s       154 MB       156 MB         0 MB   generate_unreduced_columns( complex, filtration_to_cell_map, cell_to_filtration_map, cur_dim, dualize, unreduced_columns );
+       0.0s       153 MB       156 MB         0 MB   reduction_kernel( complex.get_num_cells(), unreduced_columns, reduced_columns );
+       0.3s       150 MB       165 MB        53 MB   generate_unreduced_columns( complex, filtration_to_cell_map, cell_to_filtration_map, cur_dim, dualize, unreduced_columns );
+       0.1s       136 MB       169 MB         0 MB   reduction_kernel( complex.get_num_cells(), unreduced_columns, reduced_columns );
+       0.1s       167 MB       169 MB         1 MB   dipha::outputs::save_persistence_diagram( output_filename, complex, filtration_to_cell_map, reduced_columns, dualize, upper_dim );
+
+Overall running time in seconds: 
+0.8
+
+Reduction kernel running time in seconds: 
+0.1
+
+Overall peak mem in GB of all ranks: 
+0.2
+
+Individual peak mem in GB of per rank: 
+0.2
+
+Maximal communication traffic (without sorting) in GB between any pair of nodes:
+0.1
+
+Total communication traffic (without sorting) in GB between all pairs of nodes:
+0.1
+        0.90 real         0.71 user         0.15 sys
+ 177610752  maximum resident set size
+         0  average shared memory size
+         0  average unshared data size
+         0  average unshared stack size
+     78019  page reclaims
+       164  page faults
+         0  swaps
+        10  block input operations
+         8  block output operations
+         0  messages sent
+         0  messages received
+         0  signals received
+        48  voluntary context switches
+       367  involuntary context switches
diff --git a/benchmarks/sphere_3_192/dipha.dim_2.out.txt b/benchmarks/sphere_3_192/dipha.dim_2.out.txt
new file mode 100644
index 0000000..1a7b30b
--- /dev/null
+++ b/benchmarks/sphere_3_192/dipha.dim_2.out.txt
@@ -0,0 +1,57 @@
+
+Input filename: 
+/Users/uli/Bitbucket/phat-paper/benchmark/dipha/sphere_3_192.complex
+
+upper_dim: 3
+
+Number of processes used: 
+1
+
+Detailed information for rank 0:
+       time    prior mem     peak mem   bytes recv
+       0.0s         3 MB         4 MB         0 MB   complex.load_binary( input_filename, upper_dim );
+
+Number of cells in input: 
+56050288
+      12.3s         4 MB      1714 MB         0 MB   get_filtration_to_cell_map( complex, dualize, filtration_to_cell_map );
+       5.5s       431 MB      4416 MB       855 MB   get_cell_to_filtration_map( complex.get_num_cells(), filtration_to_cell_map, cell_to_filtration_map );
+       0.3s      2278 MB      4416 MB         0 MB   generate_unreduced_columns( complex, filtration_to_cell_map, cell_to_filtration_map, cur_dim, dualize, unreduced_columns );
+       0.0s      2279 MB      4416 MB         0 MB   reduction_kernel( complex.get_num_cells(), unreduced_columns, reduced_columns );
+       0.6s      2279 MB      4416 MB        53 MB   generate_unreduced_columns( complex, filtration_to_cell_map, cell_to_filtration_map, cur_dim, dualize, unreduced_columns );
+       0.0s      2240 MB      4416 MB         0 MB   reduction_kernel( complex.get_num_cells(), unreduced_columns, reduced_columns );
+      18.7s      2252 MB      5285 MB      3349 MB   generate_unreduced_columns( complex, filtration_to_cell_map, cell_to_filtration_map, cur_dim, dualize, unreduced_columns );
+       5.9s      3930 MB      5715 MB         0 MB   reduction_kernel( complex.get_num_cells(), unreduced_columns, reduced_columns );
+       6.8s      3716 MB      5715 MB       106 MB   dipha::outputs::save_persistence_diagram( output_filename, complex, filtration_to_cell_map, reduced_columns, dualize, upper_dim );
+
+Overall running time in seconds: 
+50.9
+
+Reduction kernel running time in seconds: 
+5.9
+
+Overall peak mem in GB of all ranks: 
+5.6
+
+Individual peak mem in GB of per rank: 
+5.6
+
+Maximal communication traffic (without sorting) in GB between any pair of nodes:
+4.3
+
+Total communication traffic (without sorting) in GB between all pairs of nodes:
+4.3
+       50.97 real        42.99 user         7.93 sys
+5993607168  maximum resident set size
+         0  average shared memory size
+         0  average unshared data size
+         0  average unshared stack size
+   5448458  page reclaims
+         0  page faults
+         0  swaps
+         0  block input operations
+         6  block output operations
+         0  messages sent
+         0  messages received
+         0  signals received
+         6  voluntary context switches
+      6625  involuntary context switches
diff --git a/benchmarks/sphere_3_192/gudhi.dim_1.out.txt b/benchmarks/sphere_3_192/gudhi.dim_1.out.txt
new file mode 100644
index 0000000..94e7f6e
--- /dev/null
+++ b/benchmarks/sphere_3_192/gudhi.dim_1.out.txt
@@ -0,0 +1,262 @@
+The complex contains 1179808 simplices 
+   and has dimension 2 
+2  0 0 inf 
+2  1 0.316534 0.682559 
+2  1 0.304761 0.647803 
+2  0 0 0.332695 
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+2  1 0.347806 0.638039 
+2  0 0 0.289189 
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+2  1 0.301045 0.303943 
+2  1 0.309336 0.310216 
+        0.56 real         0.52 user         0.02 sys
+  69439488  maximum resident set size
+         0  average shared memory size
+         0  average unshared data size
+         0  average unshared stack size
+     16943  page reclaims
+        29  page faults
+         0  swaps
+         2  block input operations
+         0  block output operations
+         0  messages sent
+         0  messages received
+         0  signals received
+        10  voluntary context switches
+        73  involuntary context switches
diff --git a/benchmarks/sphere_3_192/gudhi.dim_2.out.txt b/benchmarks/sphere_3_192/gudhi.dim_2.out.txt
new file mode 100644
index 0000000..36740c8
--- /dev/null
+++ b/benchmarks/sphere_3_192/gudhi.dim_2.out.txt
@@ -0,0 +1,263 @@
+The complex contains 56050288 simplices 
+   and has dimension 3 
+2  0 0 inf 
+2  2 0.720484 1.65562 
+2  1 0.316534 0.682559 
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+2  0 0 0.084341 
+2  0 0 0.0831521 
+2  0 0 0.0831358 
+2  0 0 0.0814685 
+2  0 0 0.0802451 
+2  0 0 0.0800348 
+2  0 0 0.0792212 
+2  0 0 0.0782455 
+2  0 0 0.076909 
+2  0 0 0.0753955 
+2  1 0.324159 0.399094 
+2  0 0 0.0746054 
+2  0 0 0.0743236 
+2  0 0 0.0741239 
+2  1 0.413789 0.487379 
+2  0 0 0.0728647 
+2  0 0 0.0714516 
+2  0 0 0.0702075 
+2  0 0 0.0692368 
+2  1 0.409968 0.478461 
+2  0 0 0.0672609 
+2  0 0 0.0651112 
+2  0 0 0.0637053 
+2  0 0 0.0633425 
+2  1 0.298341 0.360737 
+2  0 0 0.0623736 
+2  1 0.309419 0.37151 
+2  1 0.411549 0.471715 
+2  0 0 0.0593071 
+2  0 0 0.057488 
+2  1 0.377019 0.434385 
+2  1 0.329066 0.386148 
+2  0 0 0.0560443 
+2  0 0 0.0559886 
+2  0 0 0.0522132 
+2  0 0 0.0515157 
+2  1 0.412572 0.46308 
+2  0 0 0.0496187 
+2  0 0 0.048826 
+2  0 0 0.0487061 
+2  1 0.240869 0.288747 
+2  0 0 0.0471186 
+2  1 0.531636 0.578093 
+2  1 0.530723 0.576869 
+2  1 0.33364 0.3797 
+2  1 0.431628 0.477277 
+2  0 0 0.0433426 
+2  1 0.344005 0.387193 
+2  1 0.463389 0.505345 
+2  1 0.361715 0.403181 
+2  1 0.381084 0.421374 
+2  1 0.253337 0.292286 
+2  0 0 0.0387451 
+2  0 0 0.037954 
+2  1 0.377147 0.414788 
+2  1 0.308779 0.346297 
+2  1 0.317521 0.349622 
+2  0 0 0.0311057 
+2  1 0.331259 0.356381 
+2  1 0.279016 0.301331 
+2  0 0 0.0217315 
+2  1 0.350913 0.369543 
+2  1 0.324571 0.343083 
+2  0 0 0.0173134 
+2  1 0.33392 0.35111 
+2  1 0.542696 0.558863 
+2  1 0.33836 0.350411 
+2  1 0.29997 0.311993 
+2  0 0 0.0120098 
+2  1 0.189652 0.197515 
+2  0 0 0.00391946 
+2  0 0 0.0036753 
+2  1 0.445398 0.448892 
+2  1 0.24546 0.248903 
+2  1 0.301045 0.303943 
+2  1 0.309336 0.310216 
+       75.58 real        74.18 user         1.35 sys
+2911698944  maximum resident set size
+         0  average shared memory size
+         0  average unshared data size
+         0  average unshared stack size
+    820365  page reclaims
+         0  page faults
+         0  swaps
+         0  block input operations
+         0  block output operations
+         0  messages sent
+         0  messages received
+         0  signals received
+        11  voluntary context switches
+      9107  involuntary context switches
diff --git a/benchmarks/sphere_3_192/ripser.dim_1.out.txt b/benchmarks/sphere_3_192/ripser.dim_1.out.txt
new file mode 100644
index 0000000..f7f631f
--- /dev/null
+++ b/benchmarks/sphere_3_192/ripser.dim_1.out.txt
@@ -0,0 +1,264 @@
+distance matrix with 192 points
+value range: [0.00367531,2]
+persistence intervals in dim 0:
+ [0,0.00367531)
+ [0,0.00391946)
+ [0,0.0120098)
+ [0,0.0173134)
+ [0,0.0217315)
+ [0,0.0311057)
+ [0,0.037954)
+ [0,0.0387451)
+ [0,0.0433426)
+ [0,0.0471186)
+ [0,0.0487061)
+ [0,0.048826)
+ [0,0.0496187)
+ [0,0.0515157)
+ [0,0.0522132)
+ [0,0.0559886)
+ [0,0.0560443)
+ [0,0.057488)
+ [0,0.0593071)
+ [0,0.0623736)
+ [0,0.0633425)
+ [0,0.0637053)
+ [0,0.0651112)
+ [0,0.0672609)
+ [0,0.0692368)
+ [0,0.0702075)
+ [0,0.0714516)
+ [0,0.0728647)
+ [0,0.0741239)
+ [0,0.0743236)
+ [0,0.0746054)
+ [0,0.0753955)
+ [0,0.076909)
+ [0,0.0782455)
+ [0,0.0792212)
+ [0,0.0800348)
+ [0,0.0802451)
+ [0,0.0814685)
+ [0,0.0831358)
+ [0,0.0831521)
+ [0,0.084341)
+ [0,0.0857401)
+ [0,0.0870489)
+ [0,0.0884133)
+ [0,0.0959033)
+ [0,0.0970981)
+ [0,0.0988752)
+ [0,0.0994522)
+ [0,0.108768)
+ [0,0.109526)
+ [0,0.111131)
+ [0,0.111798)
+ [0,0.115939)
+ [0,0.119187)
+ [0,0.121955)
+ [0,0.122089)
+ [0,0.123527)
+ [0,0.124774)
+ [0,0.126595)
+ [0,0.127383)
+ [0,0.127864)
+ [0,0.129741)
+ [0,0.131438)
+ [0,0.131638)
+ [0,0.133033)
+ [0,0.133525)
+ [0,0.133722)
+ [0,0.134886)
+ [0,0.135402)
+ [0,0.138674)
+ [0,0.141823)
+ [0,0.142152)
+ [0,0.142537)
+ [0,0.142834)
+ [0,0.143085)
+ [0,0.143151)
+ [0,0.145018)
+ [0,0.145725)
+ [0,0.147203)
+ [0,0.147289)
+ [0,0.147427)
+ [0,0.148506)
+ [0,0.149017)
+ [0,0.149226)
+ [0,0.150747)
+ [0,0.151643)
+ [0,0.15244)
+ [0,0.154095)
+ [0,0.15587)
+ [0,0.1569)
+ [0,0.157251)
+ [0,0.157293)
+ [0,0.157373)
+ [0,0.158413)
+ [0,0.159282)
+ [0,0.162464)
+ [0,0.164809)
+ [0,0.164815)
+ [0,0.165202)
+ [0,0.165314)
+ [0,0.165494)
+ [0,0.165592)
+ [0,0.165907)
+ [0,0.167455)
+ [0,0.168587)
+ [0,0.173412)
+ [0,0.173586)
+ [0,0.173684)
+ [0,0.174172)
+ [0,0.17493)
+ [0,0.175016)
+ [0,0.176306)
+ [0,0.179609)
+ [0,0.18428)
+ [0,0.184757)
+ [0,0.189106)
+ [0,0.190642)
+ [0,0.191661)
+ [0,0.192356)
+ [0,0.192406)
+ [0,0.192733)
+ [0,0.193791)
+ [0,0.193804)
+ [0,0.195722)
+ [0,0.197377)
+ [0,0.199673)
+ [0,0.201961)
+ [0,0.202564)
+ [0,0.203812)
+ [0,0.204208)
+ [0,0.204544)
+ [0,0.205389)
+ [0,0.207016)
+ [0,0.207261)
+ [0,0.207714)
+ [0,0.208063)
+ [0,0.208851)
+ [0,0.210372)
+ [0,0.214018)
+ [0,0.215759)
+ [0,0.218526)
+ [0,0.218561)
+ [0,0.223232)
+ [0,0.227524)
+ [0,0.227933)
+ [0,0.2286)
+ [0,0.228917)
+ [0,0.231179)
+ [0,0.231675)
+ [0,0.234112)
+ [0,0.234969)
+ [0,0.237571)
+ [0,0.23879)
+ [0,0.240632)
+ [0,0.24348)
+ [0,0.24509)
+ [0,0.246491)
+ [0,0.247042)
+ [0,0.248879)
+ [0,0.249339)
+ [0,0.249345)
+ [0,0.253163)
+ [0,0.253227)
+ [0,0.25725)
+ [0,0.257997)
+ [0,0.264334)
+ [0,0.264483)
+ [0,0.266592)
+ [0,0.266635)
+ [0,0.268806)
+ [0,0.270996)
+ [0,0.274611)
+ [0,0.276431)
+ [0,0.277191)
+ [0,0.277582)
+ [0,0.280629)
+ [0,0.282169)
+ [0,0.283562)
+ [0,0.283881)
+ [0,0.285416)
+ [0,0.287316)
+ [0,0.288591)
+ [0,0.289189)
+ [0,0.293466)
+ [0,0.297053)
+ [0,0.297933)
+ [0,0.304062)
+ [0,0.316023)
+ [0,0.319493)
+ [0,0.323964)
+ [0,0.332695)
+ [0, )
+persistence intervals in dim 1:
+ [0.542696,0.558863)
+ [0.531636,0.578093)
+ [0.530723,0.576869)
+ [0.463389,0.505345)
+ [0.445398,0.448892)
+ [0.443911,0.54761)
+ [0.431628,0.477277)
+ [0.413789,0.487379)
+ [0.412572,0.46308)
+ [0.411549,0.471715)
+ [0.409968,0.478461)
+ [0.386278,0.4922)
+ [0.381084,0.421374)
+ [0.377729,0.514046)
+ [0.377147,0.414788)
+ [0.377019,0.434385)
+ [0.374531,0.477153)
+ [0.370051,0.483155)
+ [0.361715,0.403181)
+ [0.354747,0.454956)
+ [0.352356,0.541947)
+ [0.350913,0.369543)
+ [0.35058,0.580726)
+ [0.347806,0.638039)
+ [0.347388,0.559978)
+ [0.344005,0.387193)
+ [0.34298,0.65758)
+ [0.339394,0.463666)
+ [0.33836,0.350411)
+ [0.33392,0.35111)
+ [0.33364,0.3797)
+ [0.331259,0.356381)
+ [0.329066,0.386148)
+ [0.324571,0.343083)
+ [0.324159,0.399094)
+ [0.322683,0.482958)
+ [0.318032,0.417462)
+ [0.317521,0.349622)
+ [0.316534,0.682559)
+ [0.309419,0.37151)
+ [0.309336,0.310216)
+ [0.308779,0.346297)
+ [0.304761,0.647803)
+ [0.301986,0.478334)
+ [0.301045,0.303943)
+ [0.29997,0.311993)
+ [0.298341,0.360737)
+ [0.279016,0.301331)
+ [0.2576,0.373749)
+ [0.253337,0.292286)
+ [0.24546,0.248903)
+ [0.240869,0.288747)
+ [0.189652,0.197515)
+        0.03 real         0.02 user         0.00 sys
+   3379200  maximum resident set size
+         0  average shared memory size
+         0  average unshared data size
+         0  average unshared stack size
+       844  page reclaims
+         0  page faults
+         0  swaps
+         0  block input operations
+         0  block output operations
+         0  messages sent
+         0  messages received
+         0  signals received
+         4  voluntary context switches
+        21  involuntary context switches
diff --git a/benchmarks/sphere_3_192/ripser.dim_2.out.txt b/benchmarks/sphere_3_192/ripser.dim_2.out.txt
new file mode 100644
index 0000000..b3283e7
--- /dev/null
+++ b/benchmarks/sphere_3_192/ripser.dim_2.out.txt
@@ -0,0 +1,266 @@
+distance matrix with 192 points
+value range: [0.00367531,2]
+persistence intervals in dim 0:
+ [0,0.00367531)
+ [0,0.00391946)
+ [0,0.0120098)
+ [0,0.0173134)
+ [0,0.0217315)
+ [0,0.0311057)
+ [0,0.037954)
+ [0,0.0387451)
+ [0,0.0433426)
+ [0,0.0471186)
+ [0,0.0487061)
+ [0,0.048826)
+ [0,0.0496187)
+ [0,0.0515157)
+ [0,0.0522132)
+ [0,0.0559886)
+ [0,0.0560443)
+ [0,0.057488)
+ [0,0.0593071)
+ [0,0.0623736)
+ [0,0.0633425)
+ [0,0.0637053)
+ [0,0.0651112)
+ [0,0.0672609)
+ [0,0.0692368)
+ [0,0.0702075)
+ [0,0.0714516)
+ [0,0.0728647)
+ [0,0.0741239)
+ [0,0.0743236)
+ [0,0.0746054)
+ [0,0.0753955)
+ [0,0.076909)
+ [0,0.0782455)
+ [0,0.0792212)
+ [0,0.0800348)
+ [0,0.0802451)
+ [0,0.0814685)
+ [0,0.0831358)
+ [0,0.0831521)
+ [0,0.084341)
+ [0,0.0857401)
+ [0,0.0870489)
+ [0,0.0884133)
+ [0,0.0959033)
+ [0,0.0970981)
+ [0,0.0988752)
+ [0,0.0994522)
+ [0,0.108768)
+ [0,0.109526)
+ [0,0.111131)
+ [0,0.111798)
+ [0,0.115939)
+ [0,0.119187)
+ [0,0.121955)
+ [0,0.122089)
+ [0,0.123527)
+ [0,0.124774)
+ [0,0.126595)
+ [0,0.127383)
+ [0,0.127864)
+ [0,0.129741)
+ [0,0.131438)
+ [0,0.131638)
+ [0,0.133033)
+ [0,0.133525)
+ [0,0.133722)
+ [0,0.134886)
+ [0,0.135402)
+ [0,0.138674)
+ [0,0.141823)
+ [0,0.142152)
+ [0,0.142537)
+ [0,0.142834)
+ [0,0.143085)
+ [0,0.143151)
+ [0,0.145018)
+ [0,0.145725)
+ [0,0.147203)
+ [0,0.147289)
+ [0,0.147427)
+ [0,0.148506)
+ [0,0.149017)
+ [0,0.149226)
+ [0,0.150747)
+ [0,0.151643)
+ [0,0.15244)
+ [0,0.154095)
+ [0,0.15587)
+ [0,0.1569)
+ [0,0.157251)
+ [0,0.157293)
+ [0,0.157373)
+ [0,0.158413)
+ [0,0.159282)
+ [0,0.162464)
+ [0,0.164809)
+ [0,0.164815)
+ [0,0.165202)
+ [0,0.165314)
+ [0,0.165494)
+ [0,0.165592)
+ [0,0.165907)
+ [0,0.167455)
+ [0,0.168587)
+ [0,0.173412)
+ [0,0.173586)
+ [0,0.173684)
+ [0,0.174172)
+ [0,0.17493)
+ [0,0.175016)
+ [0,0.176306)
+ [0,0.179609)
+ [0,0.18428)
+ [0,0.184757)
+ [0,0.189106)
+ [0,0.190642)
+ [0,0.191661)
+ [0,0.192356)
+ [0,0.192406)
+ [0,0.192733)
+ [0,0.193791)
+ [0,0.193804)
+ [0,0.195722)
+ [0,0.197377)
+ [0,0.199673)
+ [0,0.201961)
+ [0,0.202564)
+ [0,0.203812)
+ [0,0.204208)
+ [0,0.204544)
+ [0,0.205389)
+ [0,0.207016)
+ [0,0.207261)
+ [0,0.207714)
+ [0,0.208063)
+ [0,0.208851)
+ [0,0.210372)
+ [0,0.214018)
+ [0,0.215759)
+ [0,0.218526)
+ [0,0.218561)
+ [0,0.223232)
+ [0,0.227524)
+ [0,0.227933)
+ [0,0.2286)
+ [0,0.228917)
+ [0,0.231179)
+ [0,0.231675)
+ [0,0.234112)
+ [0,0.234969)
+ [0,0.237571)
+ [0,0.23879)
+ [0,0.240632)
+ [0,0.24348)
+ [0,0.24509)
+ [0,0.246491)
+ [0,0.247042)
+ [0,0.248879)
+ [0,0.249339)
+ [0,0.249345)
+ [0,0.253163)
+ [0,0.253227)
+ [0,0.25725)
+ [0,0.257997)
+ [0,0.264334)
+ [0,0.264483)
+ [0,0.266592)
+ [0,0.266635)
+ [0,0.268806)
+ [0,0.270996)
+ [0,0.274611)
+ [0,0.276431)
+ [0,0.277191)
+ [0,0.277582)
+ [0,0.280629)
+ [0,0.282169)
+ [0,0.283562)
+ [0,0.283881)
+ [0,0.285416)
+ [0,0.287316)
+ [0,0.288591)
+ [0,0.289189)
+ [0,0.293466)
+ [0,0.297053)
+ [0,0.297933)
+ [0,0.304062)
+ [0,0.316023)
+ [0,0.319493)
+ [0,0.323964)
+ [0,0.332695)
+ [0, )
+persistence intervals in dim 1:
+ [0.542696,0.558863)
+ [0.531636,0.578093)
+ [0.530723,0.576869)
+ [0.463389,0.505345)
+ [0.445398,0.448892)
+ [0.443911,0.54761)
+ [0.431628,0.477277)
+ [0.413789,0.487379)
+ [0.412572,0.46308)
+ [0.411549,0.471715)
+ [0.409968,0.478461)
+ [0.386278,0.4922)
+ [0.381084,0.421374)
+ [0.377729,0.514046)
+ [0.377147,0.414788)
+ [0.377019,0.434385)
+ [0.374531,0.477153)
+ [0.370051,0.483155)
+ [0.361715,0.403181)
+ [0.354747,0.454956)
+ [0.352356,0.541947)
+ [0.350913,0.369543)
+ [0.35058,0.580726)
+ [0.347806,0.638039)
+ [0.347388,0.559978)
+ [0.344005,0.387193)
+ [0.34298,0.65758)
+ [0.339394,0.463666)
+ [0.33836,0.350411)
+ [0.33392,0.35111)
+ [0.33364,0.3797)
+ [0.331259,0.356381)
+ [0.329066,0.386148)
+ [0.324571,0.343083)
+ [0.324159,0.399094)
+ [0.322683,0.482958)
+ [0.318032,0.417462)
+ [0.317521,0.349622)
+ [0.316534,0.682559)
+ [0.309419,0.37151)
+ [0.309336,0.310216)
+ [0.308779,0.346297)
+ [0.304761,0.647803)
+ [0.301986,0.478334)
+ [0.301045,0.303943)
+ [0.29997,0.311993)
+ [0.298341,0.360737)
+ [0.279016,0.301331)
+ [0.2576,0.373749)
+ [0.253337,0.292286)
+ [0.24546,0.248903)
+ [0.240869,0.288747)
+ [0.189652,0.197515)
+persistence intervals in dim 2:
+ [0.720484,1.65562)
+        1.17 real         1.08 user         0.08 sys
+ 182210560  maximum resident set size
+         0  average shared memory size
+         0  average unshared data size
+         0  average unshared stack size
+     44505  page reclaims
+         0  page faults
+         0  swaps
+         0  block input operations
+         0  block output operations
+         0  messages sent
+         0  messages received
+         0  signals received
+         2  voluntary context switches
+        69  involuntary context switches
diff --git a/benchmarks/sphere_3_192/run_dionysus.sh b/benchmarks/sphere_3_192/run_dionysus.sh
index 1e5c7d3..7af804f 100644
--- a/benchmarks/sphere_3_192/run_dionysus.sh
+++ b/benchmarks/sphere_3_192/run_dionysus.sh
@@ -1 +1,3 @@
-/usr/bin/time -l ~/Source/Dionysus/examples/cohomology/rips-pairwise-cohomology -s2 -p2 ~/Bitbucket/phat-paper/benchmark/point\ cloud/sphere_3_192_points.dat 2>&1 | tee dionysus.out.txt
+/usr/bin/time -l ~/Source/Dionysus/examples/cohomology/rips-pairwise-cohomology -s2 -p2 ~/Bitbucket/phat-paper/benchmark/point\ cloud/sphere_3_192_points.dat 2>&1 | tee dionysus.dim_1.out.txt
+/usr/bin/time -l ~/Source/Dionysus/examples/cohomology/rips-pairwise-cohomology -s3 -p2 ~/Bitbucket/phat-paper/benchmark/point\ cloud/sphere_3_192_points.dat 2>&1 | tee dionysus.dim_2.out.txt
+
diff --git a/benchmarks/sphere_3_192/run_dipha.sh b/benchmarks/sphere_3_192/run_dipha.sh
index 312bcd7..b700a1a 100644
--- a/benchmarks/sphere_3_192/run_dipha.sh
+++ b/benchmarks/sphere_3_192/run_dipha.sh
@@ -1 +1,3 @@
-/usr/bin/time -l ~/Bitbucket/dipha/dipha --benchmark --upper_dim 2 --dual ~/Bitbucket/phat-paper/benchmark/dipha/sphere_3_192.complex /dev/null 2>&1 | tee dipha.out.txt
+/usr/bin/time -l ~/Bitbucket/dipha/dipha --benchmark --upper_dim 2 --dual ~/Bitbucket/phat-paper/benchmark/dipha/sphere_3_192.complex /dev/null 2>&1 | tee dipha.dim_1.out.txt
+/usr/bin/time -l ~/Bitbucket/dipha/dipha --benchmark --upper_dim 3 --dual ~/Bitbucket/phat-paper/benchmark/dipha/sphere_3_192.complex /dev/null 2>&1 | tee dipha.dim_2.out.txt
+
diff --git a/benchmarks/sphere_3_192/run_gudhi.sh b/benchmarks/sphere_3_192/run_gudhi.sh
index 80ae403..7e39da9 100644
--- a/benchmarks/sphere_3_192/run_gudhi.sh
+++ b/benchmarks/sphere_3_192/run_gudhi.sh
@@ -1 +1,3 @@
-/usr/bin/time -l ~/Source/Gudhi_library_1.3.1/example/Persistent_cohomology/rips_persistence -d2 -p2 ~/Bitbucket/phat-paper/benchmark/point\ cloud/sphere_3_192_points.dat 2>&1 | tee gudhi.out.txt
+/usr/bin/time -l ~/Source/Gudhi_library_1.3.1/example/Persistent_cohomology/rips_persistence -d2 -p2 ~/Bitbucket/phat-paper/benchmark/point\ cloud/sphere_3_192_points.dat 2>&1 | tee gudhi.dim_1.out.txt
+/usr/bin/time -l ~/Source/Gudhi_library_1.3.1/example/Persistent_cohomology/rips_persistence -d3 -p2 ~/Bitbucket/phat-paper/benchmark/point\ cloud/sphere_3_192_points.dat 2>&1 | tee gudhi.dim_2.out.txt
+
diff --git a/benchmarks/sphere_3_192/run_ripser.sh b/benchmarks/sphere_3_192/run_ripser.sh
index 209c410..4cc1c3d 100644
--- a/benchmarks/sphere_3_192/run_ripser.sh
+++ b/benchmarks/sphere_3_192/run_ripser.sh
@@ -1 +1,3 @@
-/usr/bin/time -l ~/Bitbucket/ripser/ripser ~/Bitbucket/ripser/examples/sphere_3_192.lower_distance_matrix 2>&1 | tee ripser.out.txt
+/usr/bin/time -l ~/Bitbucket/ripser/ripser ~/Bitbucket/ripser/examples/sphere_3_192.lower_distance_matrix 2>&1 | tee ripser.dim_1.out.txt
+/usr/bin/time -l ~/Bitbucket/ripser/ripser ~/Bitbucket/ripser/examples/sphere_3_192.lower_distance_matrix --dim 2 2>&1 | tee ripser.dim_2.out.txt
+