diff options
| author | Ulrich Bauer <mail@ulrich-bauer.org> | 2017-09-13 16:51:33 +0200 |
|---|---|---|
| committer | Ulrich Bauer <mail@ulrich-bauer.org> | 2017-09-13 16:51:33 +0200 |
| commit | fa4391b17f9aa2e2cedbf8ce855be2a55b7d5b60 (patch) | |
| tree | 227c63618dde7a6890b6a166d0856ccea5018605 | |
| parent | eb10fdad464f3346663fa0ca6cde9aabd7cdbc14 (diff) | |
add Eirene benchmark
| -rw-r--r-- | benchmarks/sphere_3_192/eirene.dim_1.out.txt | 173 | ||||
| -rw-r--r-- | benchmarks/sphere_3_192/eirene.dim_2.out.txt | 173 | ||||
| -rw-r--r-- | benchmarks/sphere_3_192/run_eirene.sh | 7 |
3 files changed, 353 insertions, 0 deletions
diff --git a/benchmarks/sphere_3_192/eirene.dim_1.out.txt b/benchmarks/sphere_3_192/eirene.dim_1.out.txt new file mode 100644 index 0000000..3f205e1 --- /dev/null +++ b/benchmarks/sphere_3_192/eirene.dim_1.out.txt @@ -0,0 +1,173 @@ + + +Eirene Library for Homological Algebra +Copyright (C) 2016, 2017 Gregory Henselman +www.gregoryhenselman.org + +Eirene is free software: you can redistribute it and/or modify +it under the terms of the GNU General Public License as published by +the Free Software Foundation, either version 3 of the License, or +(at your option) any later version. + +Eirene is distributed in the hope that it will be useful, +but WITHOUT ANY WARRANTY; without even the implied warranty of +MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +GNU General Public License for more details. + +You should have received a copy of the GNU General Public License +along with Eirene. If not, see <http://www.gnu.org/licenses/>. + + +WELCOME TO EIRENE! +v0.3.5 + +Please help us document Eirene's recent work! Bibtex entries and +contact information for teaching and outreach can be found at the +Eirene homepage, http://gregoryhenselman.org/eirene. + + +Please Note: MultivariateStats.jl may not be installed. This package is required for +some operations pertaining to multidimensional scaling, but is not required. +To install, enter the following at the Julia prompt: + +Pkg.add("MultivariateStats") +using MultivariateStats + + +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +in __persistF2#19__ at /Users/uli/Source/Eirene0_3_5/Eirene0_3_5.jl +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +in __persistF2#19__ at /Users/uli/Source/Eirene0_3_5/Eirene0_3_5.jl +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +in __persistF2#19__ at /Users/uli/Source/Eirene0_3_5/Eirene0_3_5.jl +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +in __persistF2#19__ at /Users/uli/Source/Eirene0_3_5/Eirene0_3_5.jl +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +in __persistF2#19__ at /Users/uli/Source/Eirene0_3_5/Eirene0_3_5.jl +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +in __persistF2#19__ at /Users/uli/Source/Eirene0_3_5/Eirene0_3_5.jl +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +in ezlabel at /Users/uli/Source/Eirene0_3_5/Eirene0_3_5.jl +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +in ezlabel at /Users/uli/Source/Eirene0_3_5/Eirene0_3_5.jl +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +in ezlabel at /Users/uli/Source/Eirene0_3_5/Eirene0_3_5.jl +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +in ezlabel at /Users/uli/Source/Eirene0_3_5/Eirene0_3_5.jl +Constructed Morse boundary operator, columns indexed by cells of dimension 1 +elapsed time: 5.240448941 seconds +Constructed Morse boundary operator, columns indexed by cells of dimension 1 +Constructed Morse boundary operator, columns indexed by cells of dimension 2 +Constructed Morse boundary operator, columns indexed by cells of dimension 3 +elapsed time: 2.614149242 seconds + 22.13 real 21.22 user 1.07 sys + 632369152 maximum resident set size + 0 average shared memory size + 0 average unshared data size + 0 average unshared stack size + 263754 page reclaims + 0 page faults + 0 swaps + 59 block input operations + 0 block output operations + 0 messages sent + 0 messages received + 5 signals received + 120 voluntary context switches + 165216 involuntary context switches diff --git a/benchmarks/sphere_3_192/eirene.dim_2.out.txt b/benchmarks/sphere_3_192/eirene.dim_2.out.txt new file mode 100644 index 0000000..acfb3db --- /dev/null +++ b/benchmarks/sphere_3_192/eirene.dim_2.out.txt @@ -0,0 +1,173 @@ + + +Eirene Library for Homological Algebra +Copyright (C) 2016, 2017 Gregory Henselman +www.gregoryhenselman.org + +Eirene is free software: you can redistribute it and/or modify +it under the terms of the GNU General Public License as published by +the Free Software Foundation, either version 3 of the License, or +(at your option) any later version. + +Eirene is distributed in the hope that it will be useful, +but WITHOUT ANY WARRANTY; without even the implied warranty of +MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +GNU General Public License for more details. + +You should have received a copy of the GNU General Public License +along with Eirene. If not, see <http://www.gnu.org/licenses/>. + + +WELCOME TO EIRENE! +v0.3.5 + +Please help us document Eirene's recent work! Bibtex entries and +contact information for teaching and outreach can be found at the +Eirene homepage, http://gregoryhenselman.org/eirene. + + +Please Note: MultivariateStats.jl may not be installed. This package is required for +some operations pertaining to multidimensional scaling, but is not required. +To install, enter the following at the Julia prompt: + +Pkg.add("MultivariateStats") +using MultivariateStats + + +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +in __persistF2#19__ at /Users/uli/Source/Eirene0_3_5/Eirene0_3_5.jl +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +in __persistF2#19__ at /Users/uli/Source/Eirene0_3_5/Eirene0_3_5.jl +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +in __persistF2#19__ at /Users/uli/Source/Eirene0_3_5/Eirene0_3_5.jl +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +in __persistF2#19__ at /Users/uli/Source/Eirene0_3_5/Eirene0_3_5.jl +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +in __persistF2#19__ at /Users/uli/Source/Eirene0_3_5/Eirene0_3_5.jl +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +in __persistF2#19__ at /Users/uli/Source/Eirene0_3_5/Eirene0_3_5.jl +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +in ezlabel at /Users/uli/Source/Eirene0_3_5/Eirene0_3_5.jl +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +in ezlabel at /Users/uli/Source/Eirene0_3_5/Eirene0_3_5.jl +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +in ezlabel at /Users/uli/Source/Eirene0_3_5/Eirene0_3_5.jl +WARNING: Base.String is deprecated, use AbstractString instead. + likely near no file:0 +in ezlabel at /Users/uli/Source/Eirene0_3_5/Eirene0_3_5.jl +Constructed Morse boundary operator, columns indexed by cells of dimension 1 +elapsed time: 5.023364429 seconds +Constructed Morse boundary operator, columns indexed by cells of dimension 1 +Constructed Morse boundary operator, columns indexed by cells of dimension 2 +Constructed Morse boundary operator, columns indexed by cells of dimension 3 +elapsed time: 13.676510239 seconds + 33.14 real 30.90 user 2.37 sys +1508073472 maximum resident set size + 0 average shared memory size + 0 average unshared data size + 0 average unshared stack size + 810601 page reclaims + 0 page faults + 0 swaps + 0 block input operations + 0 block output operations + 0 messages sent + 0 messages received + 5 signals received + 46 voluntary context switches + 195015 involuntary context switches diff --git a/benchmarks/sphere_3_192/run_eirene.sh b/benchmarks/sphere_3_192/run_eirene.sh new file mode 100644 index 0000000..4d76795 --- /dev/null +++ b/benchmarks/sphere_3_192/run_eirene.sh @@ -0,0 +1,7 @@ +/usr/bin/time -l julia --load /Users/uli/Source/Eirene0_3_5/Eirene0_3_5.jl --eval \ +'p = readdlm("/Users/uli/Bitbucket/phat-paper/benchmark/point cloud/sphere_3_192_points.dat"); eirene(p, rowsare="points", bettimax=0); eirene(p, rowsare="points", bettimax=1);' \ +2>&1 | tee eirene.dim_1.out.txt + +/usr/bin/time -l julia --load /Users/uli/Source/Eirene0_3_5/Eirene0_3_5.jl --eval \ +'p = readdlm("/Users/uli/Bitbucket/phat-paper/benchmark/point cloud/sphere_3_192_points.dat"); eirene(p, rowsare="points", bettimax=0); eirene(p, rowsare="points", bettimax=2);' \ +2>&1 | tee eirene.dim_2.out.txt |