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author | Ulrich Bauer <mail@ulrich-bauer.org> | 2017-03-30 08:39:07 +0200 |
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committer | Ulrich Bauer <mail@ulrich-bauer.org> | 2017-03-30 08:39:07 +0200 |
commit | 786f94979f88fbf495b28bd9aab50d1287d9180c (patch) | |
tree | b3314705ccb13b89ef2b02f229f4c15903f71f91 /benchmarks/sphere_3_192/dipha.dim_2.out.txt | |
parent | 9d898b2a232580a36aa2d5588887e34fb777ab5a (diff) | |
parent | d898ef27044bc7f10da478d16581915e95edc2c9 (diff) |
Merge branch 'dev' into representative-cycles
* dev: (28 commits)
progress indicator
benchmark using sparsehash
updated benchmark
typo in readme
benchmark results
gudhi benchmark output
benchmark H^1
constructors fixed
code reformatting
code reformatting
reordered initializers
cleanup compressed distance matrix access
fixed move constructor
fix for missing constructor of diameter_entry_t
allow for negative edge filtration values
cleanup binomial coefficients
more code reorganization
code reorganization
moved attribute packed
don’t store diagonal in reduction matrix when not using coefficients
...
# Conflicts:
# Makefile
# ripser.cpp
# ripser.xcodeproj/project.pbxproj
Diffstat (limited to 'benchmarks/sphere_3_192/dipha.dim_2.out.txt')
-rw-r--r-- | benchmarks/sphere_3_192/dipha.dim_2.out.txt | 57 |
1 files changed, 57 insertions, 0 deletions
diff --git a/benchmarks/sphere_3_192/dipha.dim_2.out.txt b/benchmarks/sphere_3_192/dipha.dim_2.out.txt new file mode 100644 index 0000000..1a7b30b --- /dev/null +++ b/benchmarks/sphere_3_192/dipha.dim_2.out.txt @@ -0,0 +1,57 @@ + +Input filename: +/Users/uli/Bitbucket/phat-paper/benchmark/dipha/sphere_3_192.complex + +upper_dim: 3 + +Number of processes used: +1 + +Detailed information for rank 0: + time prior mem peak mem bytes recv + 0.0s 3 MB 4 MB 0 MB complex.load_binary( input_filename, upper_dim ); + +Number of cells in input: +56050288 + 12.3s 4 MB 1714 MB 0 MB get_filtration_to_cell_map( complex, dualize, filtration_to_cell_map ); + 5.5s 431 MB 4416 MB 855 MB get_cell_to_filtration_map( complex.get_num_cells(), filtration_to_cell_map, cell_to_filtration_map ); + 0.3s 2278 MB 4416 MB 0 MB generate_unreduced_columns( complex, filtration_to_cell_map, cell_to_filtration_map, cur_dim, dualize, unreduced_columns ); + 0.0s 2279 MB 4416 MB 0 MB reduction_kernel( complex.get_num_cells(), unreduced_columns, reduced_columns ); + 0.6s 2279 MB 4416 MB 53 MB generate_unreduced_columns( complex, filtration_to_cell_map, cell_to_filtration_map, cur_dim, dualize, unreduced_columns ); + 0.0s 2240 MB 4416 MB 0 MB reduction_kernel( complex.get_num_cells(), unreduced_columns, reduced_columns ); + 18.7s 2252 MB 5285 MB 3349 MB generate_unreduced_columns( complex, filtration_to_cell_map, cell_to_filtration_map, cur_dim, dualize, unreduced_columns ); + 5.9s 3930 MB 5715 MB 0 MB reduction_kernel( complex.get_num_cells(), unreduced_columns, reduced_columns ); + 6.8s 3716 MB 5715 MB 106 MB dipha::outputs::save_persistence_diagram( output_filename, complex, filtration_to_cell_map, reduced_columns, dualize, upper_dim ); + +Overall running time in seconds: +50.9 + +Reduction kernel running time in seconds: +5.9 + +Overall peak mem in GB of all ranks: +5.6 + +Individual peak mem in GB of per rank: +5.6 + +Maximal communication traffic (without sorting) in GB between any pair of nodes: +4.3 + +Total communication traffic (without sorting) in GB between all pairs of nodes: +4.3 + 50.97 real 42.99 user 7.93 sys +5993607168 maximum resident set size + 0 average shared memory size + 0 average unshared data size + 0 average unshared stack size + 5448458 page reclaims + 0 page faults + 0 swaps + 0 block input operations + 6 block output operations + 0 messages sent + 0 messages received + 0 signals received + 6 voluntary context switches + 6625 involuntary context switches |