diff options
27 files changed, 0 insertions, 1373 deletions
diff --git a/benchmarks/benchmarks.txt b/benchmarks/benchmarks.txt deleted file mode 100644 index 348d015..0000000 --- a/benchmarks/benchmarks.txt +++ /dev/null @@ -1,10 +0,0 @@ -/usr/bin/time -l ~/Source/Dionysus/examples/cohomology/rips-pairwise-cohomology -s3 -p2 ~/Bitbucket/phat-paper/benchmark/point\ cloud/sphere_3_192_points.dat - -/usr/bin/time -l ~/Bitbucket/phat/benchmark --primal --bit_tree_pivot_column --twist ~/Bitbucket/phat-paper/benchmark/phat/sphere_3_192_coboundary.phat - -/usr/bin/time -l ~/Bitbucket/dipha/dipha --benchmark --upper_dim 3 --dual ~/Bitbucket/phat-paper/benchmark/dipha/sphere_3_192.complex /dev/null - -/usr/bin/time -l ~/Source/Gudhi_library_1.3.0/example/Persistent_cohomology/rips_persistence -d3 -p2 ~/Bitbucket/phat-paper/benchmark/point\ cloud/sphere_3_192_points.dat -o/dev/null - -c++ -std=c++11 ripser.cpp -o ripser -Ofast -D NDEBUG -D FILE_FORMAT_DIPHA -D PRINT_PERSISTENCE_PAIRS && /usr/bin/time -l ./ripser --top_dim 2 ~/Bitbucket/phat-paper/benchmark/dipha/sphere_3_192.complex - diff --git a/benchmarks/examples.txt b/benchmarks/examples.txt deleted file mode 100644 index 39afeb6..0000000 --- a/benchmarks/examples.txt +++ /dev/null @@ -1,4 +0,0 @@ -c++ -std=c++14 ripser.cpp -o ripser -Ofast -D NDEBUG -D STORE_DIAMETERS -D FILE_FORMAT_UPPER_TRIANGULAR_CSV -D PRINT_PERSISTENCE_PAIRS && /usr/bin/time -l ./ripser --top_dim 1 ~/Downloads/avian_all_nt_concat_jukes_cantor.csv - -c++ -std=c++14 ripser.cpp -o ripser -Ofast -D NDEBUG -D STORE_DIAMETERS -D FILE_FORMAT_DIPHA -D PRINT_PERSISTENCE_PAIRS && /usr/bin/time -l ./ripser --top_dim 2 ~/Bitbucket/phat-paper/benchmark/dipha/sphere_3_192.complex - diff --git a/benchmarks/sphere_3_192/dionysus.txt b/benchmarks/sphere_3_192/dionysus.txt deleted file mode 100644 index 56e23d1..0000000 --- a/benchmarks/sphere_3_192/dionysus.txt +++ /dev/null @@ -1,28 +0,0 @@ -uli:Dionysus uli$ /usr/bin/time -l ~/Source/Dionysus/examples/cohomology/rips-pairwise-cohomology -s3 -p2 ~/Bitbucket/phat-paper/benchmark/point\ cloud/sphere_3_192_points.dat -Boundary matrix: -Cocycles: *.ccl -Vertices: -Diagram: -Simplex vector generated, size: 56050288 - -0% 10 20 30 40 50 60 70 80 90 100% -|----|----|----|----|----|----|----|----|----|----| -*************************************************** -Rips timer : Elapsed time [393.20] seconds -Persistence timer : Elapsed time [322.41] seconds -Total timer : Elapsed time [807.98] seconds - 843.40 real 787.80 user 26.13 sys -3240779776 maximum resident set size - 0 average shared memory size - 0 average unshared data size - 0 average unshared stack size - 4808144 page reclaims - 0 page faults - 0 swaps - 11 block input operations - 0 block output operations - 0 messages sent - 0 messages received - 0 signals received - 11585 voluntary context switches - 691823 involuntary context switches diff --git a/benchmarks/sphere_3_192/dipha.txt b/benchmarks/sphere_3_192/dipha.txt deleted file mode 100644 index 38cc112..0000000 --- a/benchmarks/sphere_3_192/dipha.txt +++ /dev/null @@ -1,58 +0,0 @@ -uli:dipha uli$ /usr/bin/time -l ~/Bitbucket/dipha/dipha --benchmark --upper_dim 3 --dual ~/Bitbucket/phat-paper/benchmark/dipha/sphere_3_192.complex /dev/null - -Input filename: -/Users/uli/Bitbucket/phat-paper/benchmark/dipha/sphere_3_192.complex - -upper_dim: 3 - -Number of processes used: -1 - -Detailed information for rank 0: - time prior mem peak mem bytes recv - 0.0s 3 MB 4 MB 0 MB complex.load_binary( input_filename, upper_dim ); - -Number of cells in input: -56050288 - 20.1s 4 MB 1714 MB 0 MB get_filtration_to_cell_map( complex, dualize, filtration_to_cell_map ); - 11.5s 431 MB 2756 MB 855 MB get_cell_to_filtration_map( complex.get_num_cells(), filtration_to_cell_map, cell_to_filtration_map ); - 1.9s 1713 MB 2756 MB 0 MB generate_unreduced_columns( complex, filtration_to_cell_map, cell_to_filtration_map, cur_dim, dualize, unreduced_columns ); - 0.0s 2144 MB 2756 MB 0 MB reduction_kernel( complex.get_num_cells(), unreduced_columns, reduced_columns ); - 1.7s 2145 MB 2756 MB 53 MB generate_unreduced_columns( complex, filtration_to_cell_map, cell_to_filtration_map, cur_dim, dualize, unreduced_columns ); - 0.1s 2226 MB 2756 MB 0 MB reduction_kernel( complex.get_num_cells(), unreduced_columns, reduced_columns ); - 35.9s 2244 MB 2809 MB 3349 MB generate_unreduced_columns( complex, filtration_to_cell_map, cell_to_filtration_map, cur_dim, dualize, unreduced_columns ); - 17.1s 1359 MB 2809 MB 0 MB reduction_kernel( complex.get_num_cells(), unreduced_columns, reduced_columns ); - 14.9s 943 MB 3638 MB 106 MB dipha::outputs::save_persistence_diagram( output_filename, complex, filtration_to_cell_map, reduced_columns, dualize, upper_dim ); - -Overall running time in seconds: -104.5 - -Reduction kernel running time in seconds: -17.2 - -Overall peak mem in GB of all ranks: -3.6 - -Individual peak mem in GB of per rank: -3.6 - -Maximal communication traffic (without sorting) in GB between any pair of nodes: -4.3 - -Total communication traffic (without sorting) in GB between all pairs of nodes: -4.3 - 104.51 real 71.06 user 25.97 sys -3815686144 maximum resident set size - 0 average shared memory size - 0 average unshared data size - 0 average unshared stack size - 8788553 page reclaims - 0 page faults - 0 swaps - 0 block input operations - 4 block output operations - 0 messages sent - 0 messages received - 0 signals received - 2337 voluntary context switches - 238131 involuntary context switches diff --git a/benchmarks/sphere_3_192/gudhi.txt b/benchmarks/sphere_3_192/gudhi.txt deleted file mode 100644 index 87763c8..0000000 --- a/benchmarks/sphere_3_192/gudhi.txt +++ /dev/null @@ -1,18 +0,0 @@ -uli:Gudhi_library_1.3.0 uli$ /usr/bin/time -l ~/Source/Gudhi_library_1.3.0/example/Persistent_cohomology/rips_persistence -d3 -p2 ~/Bitbucket/phat-paper/benchmark/point\ cloud/sphere_3_192_points.dat -o/dev/null -The complex contains 56050288 simplices - and has dimension 3 - 71.98 real 120.27 user 5.86 sys -2905890816 maximum resident set size - 0 average shared memory size - 0 average unshared data size - 0 average unshared stack size - 1535169 page reclaims - 129 page faults - 0 swaps - 0 block input operations - 0 block output operations - 0 messages sent - 0 messages received - 0 signals received - 1957 voluntary context switches - 168798 involuntary context switches diff --git a/benchmarks/sphere_3_192/phat.txt b/benchmarks/sphere_3_192/phat.txt deleted file mode 100644 index 27934d7..0000000 --- a/benchmarks/sphere_3_192/phat.txt +++ /dev/null @@ -1,17 +0,0 @@ -uli:phat uli$ /usr/bin/time -l ~/Bitbucket/phat/benchmark --primal --bit_tree_pivot_column --twist ~/Bitbucket/phat-paper/benchmark/phat/sphere_3_192_coboundary.phat -/Users/uli/Bitbucket/phat-paper/benchmark/phat/sphere_3_192_coboundary.phat, bit_tree_pivot_column, twist, primal, Reduction time: 2.649s - 16.91 real 12.22 user 4.38 sys -3742277632 maximum resident set size - 0 average shared memory size - 0 average unshared data size - 0 average unshared stack size - 1568913 page reclaims - 8 page faults - 0 swaps - 10 block input operations - 0 block output operations - 0 messages sent - 0 messages received - 0 signals received - 20 voluntary context switches - 13471 involuntary context switches diff --git a/benchmarks/sphere_3_192/ripser.txt b/benchmarks/sphere_3_192/ripser.txt deleted file mode 100644 index 60b7939..0000000 --- a/benchmarks/sphere_3_192/ripser.txt +++ /dev/null @@ -1,268 +0,0 @@ -uli:ripser uli$ c++ -std=c++11 ripser.cpp -o ripser -Ofast -D NDEBUG -D FILE_FORMAT_DIPHA -D PRINT_PERSISTENCE_PAIRS && /usr/bin/time -l ./ripser --top_dim 2 ~/Bitbucket/phat-paper/benchmark/dipha/sphere_3_192.complex -distance matrix with 192 points -distance matrix transformed to lower triangular form -value range: [0.00367531,2] -persistence intervals in dim 0: - [0,0.145018) - [0,0.0831521) - [0,0.115939) - [0,0.202564) - [0,0.0217315) - [0,0.127383) - [0,0.0387451) - [0,0.0623736) - [0,0.282169) - [0,0.126595) - [0,0.195722) - [0,0.0792212) - [0,0.149226) - [0,0.2286) - [0,0.197377) - [0,0.0651112) - [0,0.138674) - [0,0.147427) - [0,0.124774) - [0,0.293466) - [0,0.17493) - [0,0.131438) - [0,0.151643) - [0,0.208063) - [0,0.129741) - [0,0.127864) - [0,0.131638) - [0,0.0959033) - [0,0.150747) - [0,0.119187) - [0,0.0870489) - [0,0.165592) - [0,0.121955) - [0,0.1569) - [0,0.0433426) - [0,0.280629) - [0,0.0487061) - [0,0.0746054) - [0,0.0728647) - [0,0.0471186) - [0,0.0988752) - [0,0.111131) - [0,0.141823) - [0,0.249345) - [0,0.283881) - [0,0.0522132) - [0,0.157293) - [0,0.0496187) - [0,0.143151) - [0,0.135402) - [0,0.192733) - [0,0.057488) - [0,0.0311057) - [0,0.159282) - [0,0.109526) - [0,0.234112) - [0,0.084341) - [0,0.0593071) - [0,0.133033) - [0,0.240632) - [0,0.248879) - [0,0.134886) - [0,0.228917) - [0,0.249339) - [0,0.204544) - [0,0.048826) - [0,0.143085) - [0,0.231675) - [0,0.191661) - [0,0.0637053) - [0,0.0560443) - [0,0.142537) - [0,0.00367531) - [0,0.257997) - [0,0.037954) - [0,0.204208) - [0,0.201961) - [0,0.215759) - [0,0.162464) - [0,0.0692368) - [0,0.145725) - [0,0.205389) - [0,0.203812) - [0,0.15587) - [0,0.123527) - [0,0.108768) - [0,0.165314) - [0,0.0782455) - [0,0.0173134) - [0,0.176306) - [0,0.0741239) - [0,0.0831358) - [0,0.266592) - [0,0.0515157) - [0,0.223232) - [0,0.0120098) - [0,0.122089) - [0,0.147203) - [0,0.283562) - [0,0.304062) - [0,0.253227) - [0,0.164809) - [0,0.149017) - [0,0.133525) - [0,0.237571) - [0,0.0743236) - [0,0.0672609) - [0,0.218526) - [0,0.0559886) - [0,0.165907) - [0,0.0800348) - [0,0.192356) - [0,0.164815) - [0,0.142834) - [0,0.174172) - [0,0.0714516) - [0,0.227933) - [0,0.0702075) - [0,0.18428) - [0,0.0970981) - [0,0.133722) - [0,0.0753955) - [0,0.0884133) - [0,0.15244) - [0,0.157373) - [0,0.234969) - [0,0.173412) - [0,0.193791) - [0,0.147289) - [0,0.111798) - [0,0.277191) - [0,0.167455) - [0,0.189106) - [0,0.179609) - [0,0.297053) - [0,0.158413) - [0,0.165494) - [0,0.199673) - [0,0.227524) - [0,0.076909) - [0,0.332695) - [0,0.0802451) - [0,0.0994522) - [0,0.154095) - [0,0.274611) - [0,0.24348) - [0,0.207016) - [0,0.218561) - [0,0.270996) - [0,0.214018) - [0,0.323964) - [0,0.184757) - [0,0.193804) - [0,0.276431) - [0,0.175016) - [0,0.142152) - [0,0.0857401) - [0,0.207714) - [0,0.00391946) - [0,0.168587) - [0,0.192406) - [0,0.246491) - [0,0.148506) - [0,0.25725) - [0,0.165202) - [0,0.0814685) - [0,0.247042) - [0,0.0633425) - [0,0.253163) - [0,0.157251) - [0,0.285416) - [0,0.173586) - [0,0.210372) - [0,0.266635) - [0,0.316023) - [0,0.287316) - [0,0.264334) - [0,0.208851) - [0,0.277582) - [0,0.288591) - [0,0.231179) - [0,0.190642) - [0,0.24509) - [0,0.319493) - [0,0.207261) - [0,0.173684) - [0,0.264483) - [0,0.289189) - [0,0.23879) - [0,0.297933) - [0,0.268806) - [0, ) -persistence intervals in dim 1: - [0.542696,0.558863) - [0.531636,0.578093) - [0.530723,0.576869) - [0.463389,0.505345) - [0.445398,0.448892) - [0.443911,0.54761) - [0.431628,0.477277) - [0.413789,0.487379) - [0.412572,0.46308) - [0.411549,0.471715) - [0.409968,0.478461) - [0.386278,0.4922) - [0.381084,0.421374) - [0.377729,0.514046) - [0.377147,0.414788) - [0.377019,0.434385) - [0.374531,0.477153) - [0.370051,0.483155) - [0.361715,0.403181) - [0.354747,0.454956) - [0.352356,0.541947) - [0.350913,0.369543) - [0.35058,0.580726) - [0.347806,0.638039) - [0.347388,0.559978) - [0.344005,0.387193) - [0.34298,0.65758) - [0.339394,0.463666) - [0.33836,0.350411) - [0.33392,0.35111) - [0.33364,0.3797) - [0.331259,0.356381) - [0.329066,0.386148) - [0.324571,0.343083) - [0.324159,0.399094) - [0.322683,0.482958) - [0.318032,0.417462) - [0.317521,0.349622) - [0.316534,0.682559) - [0.309419,0.37151) - [0.309336,0.310216) - [0.308779,0.346297) - [0.304761,0.647803) - [0.301986,0.478334) - [0.301045,0.303943) - [0.29997,0.311993) - [0.298341,0.360737) - [0.279016,0.301331) - [0.2576,0.373749) - [0.253337,0.292286) - [0.24546,0.248903) - [0.240869,0.288747) - [0.189652,0.197515) -persistence intervals in dim 2: - [0.720484,1.65562) - 2.22 real 2.09 user 0.11 sys - 182439936 maximum resident set size - 0 average shared memory size - 0 average unshared data size - 0 average unshared stack size - 44546 page reclaims - 9 page faults - 0 swaps - 0 block input operations - 0 block output operations - 0 messages sent - 0 messages received - 0 signals received - 1 voluntary context switches - 1307 involuntary context switches diff --git a/benchmarks/sphere_3_64/dionysus.txt b/benchmarks/sphere_3_64/dionysus.txt deleted file mode 100644 index 52b879d..0000000 --- a/benchmarks/sphere_3_64/dionysus.txt +++ /dev/null @@ -1,28 +0,0 @@ -uli:Dionysus uli$ /usr/bin/time -l ~/Source/Dionysus/examples/cohomology/rips-pairwise-cohomology -s3 -p2 ~/Bitbucket/phat-paper/benchmark/point\ cloud/sphere_3_64_points.dat -Boundary matrix: -Cocycles: *.ccl -Vertices: -Diagram: -Simplex vector generated, size: 679120 - -0% 10 20 30 40 50 60 70 80 90 100% -|----|----|----|----|----|----|----|----|----|----| -*************************************************** -Rips timer : Elapsed time [3.01] seconds -Persistence timer : Elapsed time [1.98] seconds -Total timer : Elapsed time [5.85] seconds - 5.94 real 5.85 user 0.05 sys - 76812288 maximum resident set size - 0 average shared memory size - 0 average unshared data size - 0 average unshared stack size - 18766 page reclaims - 0 page faults - 0 swaps - 0 block input operations - 0 block output operations - 0 messages sent - 0 messages received - 0 signals received - 0 voluntary context switches - 2160 involuntary context switches diff --git a/benchmarks/sphere_3_64/dipha.txt b/benchmarks/sphere_3_64/dipha.txt deleted file mode 100644 index 67534d6..0000000 --- a/benchmarks/sphere_3_64/dipha.txt +++ /dev/null @@ -1,58 +0,0 @@ -uli:dipha uli$ /usr/bin/time -l ~/Bitbucket/dipha/dipha --benchmark --upper_dim 3 --dual ~/Bitbucket/phat-paper/benchmark/dipha/sphere_3_64.complex /dev/null - -Input filename: -/Users/uli/Bitbucket/phat-paper/benchmark/dipha/sphere_3_64.complex - -upper_dim: 3 - -Number of processes used: -1 - -Detailed information for rank 0: - time prior mem peak mem bytes recv - 0.0s 3 MB 3 MB 0 MB complex.load_binary( input_filename, upper_dim ); - -Number of cells in input: -679120 - 0.2s 3 MB 24 MB 0 MB get_filtration_to_cell_map( complex, dualize, filtration_to_cell_map ); - 0.1s 24 MB 69 MB 10 MB get_cell_to_filtration_map( complex.get_num_cells(), filtration_to_cell_map, cell_to_filtration_map ); - 0.0s 84 MB 85 MB 0 MB generate_unreduced_columns( complex, filtration_to_cell_map, cell_to_filtration_map, cur_dim, dualize, unreduced_columns ); - 0.0s 85 MB 85 MB 0 MB reduction_kernel( complex.get_num_cells(), unreduced_columns, reduced_columns ); - 0.0s 85 MB 88 MB 1 MB generate_unreduced_columns( complex, filtration_to_cell_map, cell_to_filtration_map, cur_dim, dualize, unreduced_columns ); - 0.0s 88 MB 89 MB 0 MB reduction_kernel( complex.get_num_cells(), unreduced_columns, reduced_columns ); - 0.3s 89 MB 122 MB 38 MB generate_unreduced_columns( complex, filtration_to_cell_map, cell_to_filtration_map, cur_dim, dualize, unreduced_columns ); - 0.1s 102 MB 142 MB 0 MB reduction_kernel( complex.get_num_cells(), unreduced_columns, reduced_columns ); - 0.1s 141 MB 142 MB 3 MB dipha::outputs::save_persistence_diagram( output_filename, complex, filtration_to_cell_map, reduced_columns, dualize, upper_dim ); - -Overall running time in seconds: -0.8 - -Reduction kernel running time in seconds: -0.1 - -Overall peak mem in GB of all ranks: -0.1 - -Individual peak mem in GB of per rank: -0.1 - -Maximal communication traffic (without sorting) in GB between any pair of nodes: -0.1 - -Total communication traffic (without sorting) in GB between all pairs of nodes: -0.1 - 0.81 real 0.65 user 0.13 sys - 149577728 maximum resident set size - 0 average shared memory size - 0 average unshared data size - 0 average unshared stack size - 51467 page reclaims - 0 page faults - 0 swaps - 0 block input operations - 1 block output operations - 0 messages sent - 0 messages received - 0 signals received - 7 voluntary context switches - 1069 involuntary context switches diff --git a/benchmarks/sphere_3_64/gudhi.txt b/benchmarks/sphere_3_64/gudhi.txt deleted file mode 100644 index ee69c4a..0000000 --- a/benchmarks/sphere_3_64/gudhi.txt +++ /dev/null @@ -1,18 +0,0 @@ -uli:Gudhi_library_1.3.0 uli$ /usr/bin/time -l ~/Source/Gudhi_library_1.3.0/example/Persistent_cohomology/rips_persistence -d3 -p2 ~/Bitbucket/phat-paper/benchmark/point\ cloud/sphere_3_64_points.dat -o/dev/null -The complex contains 679120 simplices - and has dimension 3 - 0.45 real 0.75 user 0.02 sys - 37740544 maximum resident set size - 0 average shared memory size - 0 average unshared data size - 0 average unshared stack size - 9124 page reclaims - 122 page faults - 0 swaps - 1 block input operations - 0 block output operations - 0 messages sent - 0 messages received - 0 signals received - 14 voluntary context switches - 2324 involuntary context switches diff --git a/benchmarks/sphere_3_64/phat.txt b/benchmarks/sphere_3_64/phat.txt deleted file mode 100644 index 40c18fe..0000000 --- a/benchmarks/sphere_3_64/phat.txt +++ /dev/null @@ -1,17 +0,0 @@ -uli:phat uli$ /usr/bin/time -l ~/Bitbucket/phat/benchmark --primal --bit_tree_pivot_column --twist ~/Bitbucket/phat-paper/benchmark/phat/sphere_3_64_coboundary.phat -/Users/uli/Bitbucket/phat-paper/benchmark/phat/sphere_3_64_coboundary.phat, bit_tree_pivot_column, twist, primal, Reduction time: 0.019s - 0.22 real 0.15 user 0.04 sys - 47742976 maximum resident set size - 0 average shared memory size - 0 average unshared data size - 0 average unshared stack size - 11669 page reclaims - 2 page faults - 0 swaps - 2 block input operations - 0 block output operations - 0 messages sent - 0 messages received - 0 signals received - 4 voluntary context switches - 106 involuntary context switches diff --git a/benchmarks/sphere_3_64/ripser.txt b/benchmarks/sphere_3_64/ripser.txt deleted file mode 100644 index 016143d..0000000 --- a/benchmarks/sphere_3_64/ripser.txt +++ /dev/null @@ -1,103 +0,0 @@ -uli:ripser uli$ c++ -std=c++11 ripser.cpp -o ripser -Ofast -D NDEBUG -D FILE_FORMAT_DIPHA -D PRINT_PERSISTENCE_PAIRS && /usr/bin/time -l ./ripser --top_dim 2 ~/Bitbucket/phat-paper/benchmark/dipha/sphere_3_64.complex -distance matrix with 64 points -distance matrix transformed to lower triangular form -value range: [0.00391946,1.99927] -persistence intervals in dim 0: - [0,0.147289) - [0,0.111798) - [0,0.279354) - [0,0.379849) - [0,0.217485) - [0,0.179609) - [0,0.297053) - [0,0.227524) - [0,0.334523) - [0,0.205129) - [0,0.266643) - [0,0.076909) - [0,0.424333) - [0,0.0802451) - [0,0.141103) - [0,0.154095) - [0,0.280747) - [0,0.561426) - [0,0.255364) - [0,0.218561) - [0,0.344005) - [0,0.457212) - [0,0.339394) - [0,0.184757) - [0,0.193804) - [0,0.276431) - [0,0.276383) - [0,0.273482) - [0,0.162738) - [0,0.208851) - [0,0.00391946) - [0,0.168587) - [0,0.231288) - [0,0.370337) - [0,0.151879) - [0,0.336643) - [0,0.176636) - [0,0.0814685) - [0,0.287316) - [0,0.0633425) - [0,0.46675) - [0,0.169115) - [0,0.387245) - [0,0.354112) - [0,0.236525) - [0,0.377019) - [0,0.396994) - [0,0.58991) - [0,0.374531) - [0,0.374138) - [0,0.439977) - [0,0.487279) - [0,0.231179) - [0,0.200333) - [0,0.401576) - [0,0.574945) - [0,0.252863) - [0,0.173684) - [0,0.284319) - [0,0.355419) - [0,0.23879) - [0,0.381084) - [0,0.532104) - [0, ) -persistence intervals in dim 1: - [0.84172,1.04196) - [0.763446,0.863406) - [0.727244,0.74155) - [0.708398,0.757279) - [0.655113,0.849319) - [0.62495,0.753672) - [0.60904,0.682559) - [0.607973,0.672219) - [0.606907,0.829538) - [0.588045,1.04527) - [0.57698,0.769491) - [0.559498,0.586113) - [0.525224,0.645181) - [0.445398,0.448892) - [0.412572,0.478334) - [0.376457,0.63549) -persistence intervals in dim 2: - [1.10328,1.67029) - 0.05 real 0.05 user 0.00 sys - 4300800 maximum resident set size - 0 average shared memory size - 0 average unshared data size - 0 average unshared stack size - 1054 page reclaims - 9 page faults - 0 swaps - 0 block input operations - 0 block output operations - 0 messages sent - 0 messages received - 0 signals received - 1 voluntary context switches - 10 involuntary context switches diff --git a/examples/almostlinear4.lower_distance_matrix b/examples/almostlinear4.lower_distance_matrix deleted file mode 100644 index 0992677..0000000 --- a/examples/almostlinear4.lower_distance_matrix +++ /dev/null @@ -1,3 +0,0 @@ -1, -2,1, -1,1.9,1 diff --git a/examples/almostlinear4a.lower_distance_matrix b/examples/almostlinear4a.lower_distance_matrix deleted file mode 100644 index c0e94e6..0000000 --- a/examples/almostlinear4a.lower_distance_matrix +++ /dev/null @@ -1,3 +0,0 @@ -1, -2,1, -3,4,5 diff --git a/examples/almostlinear4b.lower_distance_matrix b/examples/almostlinear4b.lower_distance_matrix deleted file mode 100644 index c990b9b..0000000 --- a/examples/almostlinear4b.lower_distance_matrix +++ /dev/null @@ -1,3 +0,0 @@ -1, -2,1, -3,5,4 diff --git a/examples/almostlinear4c.lower_distance_matrix b/examples/almostlinear4c.lower_distance_matrix deleted file mode 100644 index da2bb0f..0000000 --- a/examples/almostlinear4c.lower_distance_matrix +++ /dev/null @@ -1,3 +0,0 @@ -1, -2,1, -4,3,5 diff --git a/examples/linear5.lower_distance_matrix b/examples/linear5.lower_distance_matrix deleted file mode 100644 index 9a6f670..0000000 --- a/examples/linear5.lower_distance_matrix +++ /dev/null @@ -1,4 +0,0 @@ -1, -2,1, -3,4,5, - diff --git a/examples/projective_plane.compressed_lower_distance_matrix.dipha b/examples/projective_plane.compressed_lower_distance_matrix.dipha Binary files differdeleted file mode 100644 index 8f091e0..0000000 --- a/examples/projective_plane.compressed_lower_distance_matrix.dipha +++ /dev/null diff --git a/examples/projective_plane.compressed_lower_distance_matrix.dipha_pairs b/examples/projective_plane.compressed_lower_distance_matrix.dipha_pairs Binary files differdeleted file mode 100644 index 2018749..0000000 --- a/examples/projective_plane.compressed_lower_distance_matrix.dipha_pairs +++ /dev/null diff --git a/examples/projective_plane.csv b/examples/projective_plane.csv deleted file mode 100644 index 6353b07..0000000 --- a/examples/projective_plane.csv +++ /dev/null @@ -1,13 +0,0 @@ -0,1,1,1,1,1,1,1,1,2,2,2,2 -1,0,2,2,2,1,2,1,2,1,2,2,2 -1,2,0,2,2,2,1,2,1,1,2,2,2 -1,2,2,0,2,1,2,2,1,2,2,2,1 -1,2,2,2,0,2,1,1,2,2,2,2,1 -1,1,2,1,2,0,2,2,2,1,1,2,1 -1,2,1,2,1,2,0,2,2,1,1,2,1 -1,1,2,2,1,2,2,0,2,1,2,1,1 -1,2,1,1,2,2,2,2,0,1,2,1,1 -2,1,1,2,2,1,1,1,1,0,1,1,2 -2,2,2,2,2,1,1,2,2,1,0,2,1 -2,2,2,2,2,2,2,1,1,1,2,0,1 -2,2,2,1,1,1,1,1,1,2,1,1,0
\ No newline at end of file diff --git a/examples/random20.lower_distance_matrix b/examples/random20.lower_distance_matrix deleted file mode 100644 index 241408f..0000000 --- a/examples/random20.lower_distance_matrix +++ /dev/null @@ -1 +0,0 @@ -68,6,155,10,173,171,168,52,32,63,136,16,78,163,8,175,28,70,107,165,18,97,99,118,49,76,48,133,58,92,44,57,190,101,25,94,148,37,2,146,56,95,125,121,142,31,21,152,154,124,75,120,112,45,39,115,170,179,157,183,15,14,38,182,151,164,185,96,127,41,53,180,166,122,134,100,20,169,36,40,87,46,140,82,187,71,12,178,159,184,189,3,86,61,137,93,116,167,150,186,126,172,29,34,135,27,144,177,73,19,147,17,26,1,139,22,69,9,138,160,181,105,24,129,91,11,64,103,132,130,4,47,66,85,65,149,109,161,81,128,7,113,67,77,54,35,30,74,98,114,5,176,158,62,89,79,156,102,119,141,51,143,108,131,106,33,123,43,174,55,83,80,145,104,153,13,188,90,117,111,60,84,23,59,88,110,42,50,72,162
\ No newline at end of file diff --git a/examples/test.lower_distance_matrix b/examples/test.lower_distance_matrix deleted file mode 100644 index e1aac02..0000000 --- a/examples/test.lower_distance_matrix +++ /dev/null @@ -1,4 +0,0 @@ -1, -2,3, -4,5,6, -7,8,9,10 diff --git a/examples/test.upper_distance_matrix b/examples/test.upper_distance_matrix deleted file mode 100644 index 274f252..0000000 --- a/examples/test.upper_distance_matrix +++ /dev/null @@ -1,5 +0,0 @@ -1, -3,4 -4,3,1, -3,4,3,1 -1,3,4,3,1 diff --git a/examples/test2.lower_distance_matrix b/examples/test2.lower_distance_matrix deleted file mode 100644 index 4bb81a4..0000000 --- a/examples/test2.lower_distance_matrix +++ /dev/null @@ -1,5 +0,0 @@ -1, -3,1, -4,3,1, -3,4,3,1, -1,3,4,3,1 diff --git a/examples/test2.upper_distance_matrix b/examples/test2.upper_distance_matrix deleted file mode 100644 index 9d4e39e..0000000 --- a/examples/test2.upper_distance_matrix +++ /dev/null @@ -1,5 +0,0 @@ -1,3,4,3,1, - 1,3,4,3, - 1,3,4, - 1,3, - 1 diff --git a/prettyprint.hpp b/prettyprint.hpp deleted file mode 100644 index 6bf2543..0000000 --- a/prettyprint.hpp +++ /dev/null @@ -1,445 +0,0 @@ -// Copyright Louis Delacroix 2010 - 2014. -// Distributed under the Boost Software License, Version 1.0. -// (See accompanying file LICENSE_1_0.txt or copy at -// http://www.boost.org/LICENSE_1_0.txt) -// -// A pretty printing library for C++ -// -// Usage: -// Include this header, and operator<< will "just work". - -#ifndef H_PRETTY_PRINT -#define H_PRETTY_PRINT - -#include <cstddef> -#include <iterator> -#include <memory> -#include <ostream> -#include <set> -#include <tuple> -#include <type_traits> -#include <unordered_set> -#include <utility> -#include <valarray> - -namespace pretty_print -{ - namespace detail - { - // SFINAE type trait to detect whether T::const_iterator exists. - - struct sfinae_base - { - using yes = char; - using no = yes[2]; - }; - - template <typename T> - struct has_const_iterator : private sfinae_base - { - private: - template <typename C> static yes & test(typename C::const_iterator*); - template <typename C> static no & test(...); - public: - static const bool value = sizeof(test<T>(nullptr)) == sizeof(yes); - using type = T; - }; - - template <typename T> - struct has_begin_end : private sfinae_base - { - private: - template <typename C> - static yes & f(typename std::enable_if< - std::is_same<decltype(static_cast<typename C::const_iterator(C::*)() const>(&C::begin)), - typename C::const_iterator(C::*)() const>::value>::type *); - - template <typename C> static no & f(...); - - template <typename C> - static yes & g(typename std::enable_if< - std::is_same<decltype(static_cast<typename C::const_iterator(C::*)() const>(&C::end)), - typename C::const_iterator(C::*)() const>::value, void>::type*); - - template <typename C> static no & g(...); - - public: - static bool const beg_value = sizeof(f<T>(nullptr)) == sizeof(yes); - static bool const end_value = sizeof(g<T>(nullptr)) == sizeof(yes); - }; - - } // namespace detail - - - // Holds the delimiter values for a specific character type - - template <typename TChar> - struct delimiters_values - { - using char_type = TChar; - const char_type * prefix; - const char_type * delimiter; - const char_type * postfix; - }; - - - // Defines the delimiter values for a specific container and character type - - template <typename T, typename TChar> - struct delimiters - { - using type = delimiters_values<TChar>; - static const type values; - }; - - - // Functor to print containers. You can use this directly if you want - // to specificy a non-default delimiters type. The printing logic can - // be customized by specializing the nested template. - - template <typename T, - typename TChar = char, - typename TCharTraits = ::std::char_traits<TChar>, - typename TDelimiters = delimiters<T, TChar>> - struct print_container_helper - { - using delimiters_type = TDelimiters; - using ostream_type = std::basic_ostream<TChar, TCharTraits>; - - template <typename U> - struct printer - { - static void print_body(const U & c, ostream_type & stream) - { - using std::begin; - using std::end; - - auto it = begin(c); - const auto the_end = end(c); - - if (it != the_end) - { - for ( ; ; ) - { - stream << *it; - - if (++it == the_end) break; - - if (delimiters_type::values.delimiter != NULL) - stream << delimiters_type::values.delimiter; - } - } - } - }; - - print_container_helper(const T & container) - : container_(container) - { } - - inline void operator()(ostream_type & stream) const - { - if (delimiters_type::values.prefix != NULL) - stream << delimiters_type::values.prefix; - - printer<T>::print_body(container_, stream); - - if (delimiters_type::values.postfix != NULL) - stream << delimiters_type::values.postfix; - } - - private: - const T & container_; - }; - - // Specialization for pairs - - template <typename T, typename TChar, typename TCharTraits, typename TDelimiters> - template <typename T1, typename T2> - struct print_container_helper<T, TChar, TCharTraits, TDelimiters>::printer<std::pair<T1, T2>> - { - using ostream_type = print_container_helper<T, TChar, TCharTraits, TDelimiters>::ostream_type; - - static void print_body(const std::pair<T1, T2> & c, ostream_type & stream) - { - stream << c.first; - if (print_container_helper<T, TChar, TCharTraits, TDelimiters>::delimiters_type::values.delimiter != NULL) - stream << print_container_helper<T, TChar, TCharTraits, TDelimiters>::delimiters_type::values.delimiter; - stream << c.second; - } - }; - - // Specialization for tuples - - template <typename T, typename TChar, typename TCharTraits, typename TDelimiters> - template <typename ...Args> - struct print_container_helper<T, TChar, TCharTraits, TDelimiters>::printer<std::tuple<Args...>> - { - using ostream_type = print_container_helper<T, TChar, TCharTraits, TDelimiters>::ostream_type; - using element_type = std::tuple<Args...>; - - template <std::size_t I> struct Int { }; - - static void print_body(const element_type & c, ostream_type & stream) - { - tuple_print(c, stream, Int<0>()); - } - - static void tuple_print(const element_type &, ostream_type &, Int<sizeof...(Args)>) - { - } - - static void tuple_print(const element_type & c, ostream_type & stream, - typename std::conditional<sizeof...(Args) != 0, Int<0>, std::nullptr_t>::type) - { - stream << std::get<0>(c); - tuple_print(c, stream, Int<1>()); - } - - template <std::size_t N> - static void tuple_print(const element_type & c, ostream_type & stream, Int<N>) - { - if (print_container_helper<T, TChar, TCharTraits, TDelimiters>::delimiters_type::values.delimiter != NULL) - stream << print_container_helper<T, TChar, TCharTraits, TDelimiters>::delimiters_type::values.delimiter; - - stream << std::get<N>(c); - - tuple_print(c, stream, Int<N + 1>()); - } - }; - - // Prints a print_container_helper to the specified stream. - - template<typename T, typename TChar, typename TCharTraits, typename TDelimiters> - inline std::basic_ostream<TChar, TCharTraits> & operator<<( - std::basic_ostream<TChar, TCharTraits> & stream, - const print_container_helper<T, TChar, TCharTraits, TDelimiters> & helper) - { - helper(stream); - return stream; - } - - - // Basic is_container template; specialize to derive from std::true_type for all desired container types - - template <typename T> - struct is_container : public std::integral_constant<bool, - detail::has_const_iterator<T>::value && - detail::has_begin_end<T>::beg_value && - detail::has_begin_end<T>::end_value> { }; - - template <typename T, std::size_t N> - struct is_container<T[N]> : std::true_type { }; - - template <std::size_t N> - struct is_container<char[N]> : std::false_type { }; - - template <typename T> - struct is_container<std::valarray<T>> : std::true_type { }; - - template <typename T1, typename T2> - struct is_container<std::pair<T1, T2>> : std::true_type { }; - - template <typename ...Args> - struct is_container<std::tuple<Args...>> : std::true_type { }; - - - // Default delimiters - - template <typename T> struct delimiters<T, char> { static const delimiters_values<char> values; }; - template <typename T> const delimiters_values<char> delimiters<T, char>::values = { "[", ", ", "]" }; - template <typename T> struct delimiters<T, wchar_t> { static const delimiters_values<wchar_t> values; }; - template <typename T> const delimiters_values<wchar_t> delimiters<T, wchar_t>::values = { L"[", L", ", L"]" }; - - - // Delimiters for (multi)set and unordered_(multi)set - - template <typename T, typename TComp, typename TAllocator> - struct delimiters< ::std::set<T, TComp, TAllocator>, char> { static const delimiters_values<char> values; }; - - template <typename T, typename TComp, typename TAllocator> - const delimiters_values<char> delimiters< ::std::set<T, TComp, TAllocator>, char>::values = { "{", ", ", "}" }; - - template <typename T, typename TComp, typename TAllocator> - struct delimiters< ::std::set<T, TComp, TAllocator>, wchar_t> { static const delimiters_values<wchar_t> values; }; - - template <typename T, typename TComp, typename TAllocator> - const delimiters_values<wchar_t> delimiters< ::std::set<T, TComp, TAllocator>, wchar_t>::values = { L"{", L", ", L"}" }; - - template <typename T, typename TComp, typename TAllocator> - struct delimiters< ::std::multiset<T, TComp, TAllocator>, char> { static const delimiters_values<char> values; }; - - template <typename T, typename TComp, typename TAllocator> - const delimiters_values<char> delimiters< ::std::multiset<T, TComp, TAllocator>, char>::values = { "{", ", ", "}" }; - - template <typename T, typename TComp, typename TAllocator> - struct delimiters< ::std::multiset<T, TComp, TAllocator>, wchar_t> { static const delimiters_values<wchar_t> values; }; - - template <typename T, typename TComp, typename TAllocator> - const delimiters_values<wchar_t> delimiters< ::std::multiset<T, TComp, TAllocator>, wchar_t>::values = { L"{", L", ", L"}" }; - - template <typename T, typename THash, typename TEqual, typename TAllocator> - struct delimiters< ::std::unordered_set<T, THash, TEqual, TAllocator>, char> { static const delimiters_values<char> values; }; - - template <typename T, typename THash, typename TEqual, typename TAllocator> - const delimiters_values<char> delimiters< ::std::unordered_set<T, THash, TEqual, TAllocator>, char>::values = { "{", ", ", "}" }; - - template <typename T, typename THash, typename TEqual, typename TAllocator> - struct delimiters< ::std::unordered_set<T, THash, TEqual, TAllocator>, wchar_t> { static const delimiters_values<wchar_t> values; }; - - template <typename T, typename THash, typename TEqual, typename TAllocator> - const delimiters_values<wchar_t> delimiters< ::std::unordered_set<T, THash, TEqual, TAllocator>, wchar_t>::values = { L"{", L", ", L"}" }; - - template <typename T, typename THash, typename TEqual, typename TAllocator> - struct delimiters< ::std::unordered_multiset<T, THash, TEqual, TAllocator>, char> { static const delimiters_values<char> values; }; - - template <typename T, typename THash, typename TEqual, typename TAllocator> - const delimiters_values<char> delimiters< ::std::unordered_multiset<T, THash, TEqual, TAllocator>, char>::values = { "{", ", ", "}" }; - - template <typename T, typename THash, typename TEqual, typename TAllocator> - struct delimiters< ::std::unordered_multiset<T, THash, TEqual, TAllocator>, wchar_t> { static const delimiters_values<wchar_t> values; }; - - template <typename T, typename THash, typename TEqual, typename TAllocator> - const delimiters_values<wchar_t> delimiters< ::std::unordered_multiset<T, THash, TEqual, TAllocator>, wchar_t>::values = { L"{", L", ", L"}" }; - - - // Delimiters for pair and tuple - - template <typename T1, typename T2> struct delimiters<std::pair<T1, T2>, char> { static const delimiters_values<char> values; }; - template <typename T1, typename T2> const delimiters_values<char> delimiters<std::pair<T1, T2>, char>::values = { "(", ", ", ")" }; - template <typename T1, typename T2> struct delimiters< ::std::pair<T1, T2>, wchar_t> { static const delimiters_values<wchar_t> values; }; - template <typename T1, typename T2> const delimiters_values<wchar_t> delimiters< ::std::pair<T1, T2>, wchar_t>::values = { L"(", L", ", L")" }; - - template <typename ...Args> struct delimiters<std::tuple<Args...>, char> { static const delimiters_values<char> values; }; - template <typename ...Args> const delimiters_values<char> delimiters<std::tuple<Args...>, char>::values = { "(", ", ", ")" }; - template <typename ...Args> struct delimiters< ::std::tuple<Args...>, wchar_t> { static const delimiters_values<wchar_t> values; }; - template <typename ...Args> const delimiters_values<wchar_t> delimiters< ::std::tuple<Args...>, wchar_t>::values = { L"(", L", ", L")" }; - - - // Type-erasing helper class for easy use of custom delimiters. - // Requires TCharTraits = std::char_traits<TChar> and TChar = char or wchar_t, and MyDelims needs to be defined for TChar. - // Usage: "cout << pretty_print::custom_delims<MyDelims>(x)". - - struct custom_delims_base - { - virtual ~custom_delims_base() { } - virtual std::ostream & stream(::std::ostream &) = 0; - virtual std::wostream & stream(::std::wostream &) = 0; - }; - - template <typename T, typename Delims> - struct custom_delims_wrapper : custom_delims_base - { - custom_delims_wrapper(const T & t_) : t(t_) { } - - std::ostream & stream(std::ostream & s) - { - return s << print_container_helper<T, char, std::char_traits<char>, Delims>(t); - } - - std::wostream & stream(std::wostream & s) - { - return s << print_container_helper<T, wchar_t, std::char_traits<wchar_t>, Delims>(t); - } - - private: - const T & t; - }; - - template <typename Delims> - struct custom_delims - { - template <typename Container> - custom_delims(const Container & c) : base(new custom_delims_wrapper<Container, Delims>(c)) { } - - std::unique_ptr<custom_delims_base> base; - }; - - template <typename TChar, typename TCharTraits, typename Delims> - inline std::basic_ostream<TChar, TCharTraits> & operator<<(std::basic_ostream<TChar, TCharTraits> & s, const custom_delims<Delims> & p) - { - return p.base->stream(s); - } - - - // A wrapper for a C-style array given as pointer-plus-size. - // Usage: std::cout << pretty_print_array(arr, n) << std::endl; - - template<typename T> - struct array_wrapper_n - { - typedef const T * const_iterator; - typedef T value_type; - - array_wrapper_n(const T * const a, size_t n) : _array(a), _n(n) { } - inline const_iterator begin() const { return _array; } - inline const_iterator end() const { return _array + _n; } - - private: - const T * const _array; - size_t _n; - }; - - - // A wrapper for hash-table based containers that offer local iterators to each bucket. - // Usage: std::cout << bucket_print(m, 4) << std::endl; (Prints bucket 5 of container m.) - - template <typename T> - struct bucket_print_wrapper - { - typedef typename T::const_local_iterator const_iterator; - typedef typename T::size_type size_type; - - const_iterator begin() const - { - return m_map.cbegin(n); - } - - const_iterator end() const - { - return m_map.cend(n); - } - - bucket_print_wrapper(const T & m, size_type bucket) : m_map(m), n(bucket) { } - - private: - const T & m_map; - const size_type n; - }; - -} // namespace pretty_print - - -// Global accessor functions for the convenience wrappers - -template<typename T> -inline pretty_print::array_wrapper_n<T> pretty_print_array(const T * const a, size_t n) -{ - return pretty_print::array_wrapper_n<T>(a, n); -} - -template <typename T> pretty_print::bucket_print_wrapper<T> -bucket_print(const T & m, typename T::size_type n) -{ - return pretty_print::bucket_print_wrapper<T>(m, n); -} - - -// Main magic entry point: An overload snuck into namespace std. -// Can we do better? - -namespace std -{ - // Prints a container to the stream using default delimiters - - template<typename T, typename TChar, typename TCharTraits> - inline typename enable_if< ::pretty_print::is_container<T>::value, - basic_ostream<TChar, TCharTraits> &>::type - operator<<(basic_ostream<TChar, TCharTraits> & stream, const T & container) - { - return stream << ::pretty_print::print_container_helper<T, TChar, TCharTraits>(container); - } -} - - - -#endif // H_PRETTY_PRINT diff --git a/ripser.xcodeproj/project.pbxproj b/ripser.xcodeproj/project.pbxproj deleted file mode 100644 index d924596..0000000 --- a/ripser.xcodeproj/project.pbxproj +++ /dev/null @@ -1,252 +0,0 @@ -// !$*UTF8*$! -{ - archiveVersion = 1; - classes = { - }; - objectVersion = 46; - objects = { - -/* Begin PBXBuildFile section */ - 55E113311BD63CF3002B6F51 /* ripser.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 55E113301BD63CF3002B6F51 /* ripser.cpp */; settings = {ASSET_TAGS = (); }; }; -/* End PBXBuildFile section */ - -/* Begin PBXCopyFilesBuildPhase section */ - 551018461BD63CB300990BFF /* CopyFiles */ = { - isa = PBXCopyFilesBuildPhase; - buildActionMask = 2147483647; - dstPath = /usr/share/man/man1/; - dstSubfolderSpec = 0; - files = ( - ); - runOnlyForDeploymentPostprocessing = 1; - }; -/* End PBXCopyFilesBuildPhase section */ - -/* Begin PBXFileReference section */ - 551018481BD63CB300990BFF /* ripser */ = {isa = PBXFileReference; explicitFileType = "compiled.mach-o.executable"; includeInIndex = 0; path = ripser; sourceTree = BUILT_PRODUCTS_DIR; }; - 55E113301BD63CF3002B6F51 /* ripser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = ripser.cpp; sourceTree = SOURCE_ROOT; }; -/* End PBXFileReference section */ - -/* Begin PBXFrameworksBuildPhase section */ - 551018451BD63CB300990BFF /* Frameworks */ = { - isa = PBXFrameworksBuildPhase; - buildActionMask = 2147483647; - files = ( - ); - runOnlyForDeploymentPostprocessing = 0; - }; -/* End PBXFrameworksBuildPhase section */ - -/* Begin PBXGroup section */ - 5510183F1BD63CB300990BFF = { - isa = PBXGroup; - children = ( - 5510184A1BD63CB300990BFF /* ripser */, - 551018491BD63CB300990BFF /* Products */, - ); - sourceTree = "<group>"; - }; - 551018491BD63CB300990BFF /* Products */ = { - isa = PBXGroup; - children = ( - 551018481BD63CB300990BFF /* ripser */, - ); - name = Products; - sourceTree = "<group>"; - }; - 5510184A1BD63CB300990BFF /* ripser */ = { - isa = PBXGroup; - children = ( - 55E113301BD63CF3002B6F51 /* ripser.cpp */, - ); - path = ripser; - sourceTree = "<group>"; - }; -/* End PBXGroup section */ - -/* Begin PBXNativeTarget section */ - 551018471BD63CB300990BFF /* ripser */ = { - isa = PBXNativeTarget; - buildConfigurationList = 5510184F1BD63CB300990BFF /* Build configuration list for PBXNativeTarget "ripser" */; - buildPhases = ( - 551018441BD63CB300990BFF /* Sources */, - 551018451BD63CB300990BFF /* Frameworks */, - 551018461BD63CB300990BFF /* CopyFiles */, - ); - buildRules = ( - ); - dependencies = ( - ); - name = ripser; - productName = ripser; - productReference = 551018481BD63CB300990BFF /* ripser */; - productType = "com.apple.product-type.tool"; - }; -/* End PBXNativeTarget section */ - -/* Begin PBXProject section */ - 551018401BD63CB300990BFF /* Project object */ = { - isa = PBXProject; - attributes = { - LastUpgradeCheck = 0700; - ORGANIZATIONNAME = "ulrich-bauer.org"; - TargetAttributes = { - 551018471BD63CB300990BFF = { - CreatedOnToolsVersion = 7.0.1; - }; - }; - }; - buildConfigurationList = 551018431BD63CB300990BFF /* Build configuration list for PBXProject "ripser" */; - compatibilityVersion = "Xcode 3.2"; - developmentRegion = English; - hasScannedForEncodings = 0; - knownRegions = ( - en, - ); - mainGroup = 5510183F1BD63CB300990BFF; - productRefGroup = 551018491BD63CB300990BFF /* Products */; - projectDirPath = ""; - projectRoot = ""; - targets = ( - 551018471BD63CB300990BFF /* ripser */, - ); - }; -/* End PBXProject section */ - -/* Begin PBXSourcesBuildPhase section */ - 551018441BD63CB300990BFF /* Sources */ = { - isa = PBXSourcesBuildPhase; - buildActionMask = 2147483647; - files = ( - 55E113311BD63CF3002B6F51 /* ripser.cpp in Sources */, - ); - runOnlyForDeploymentPostprocessing = 0; - }; -/* End PBXSourcesBuildPhase section */ - -/* Begin XCBuildConfiguration section */ - 5510184D1BD63CB300990BFF /* Debug */ = { - isa = XCBuildConfiguration; - buildSettings = { - ALWAYS_SEARCH_USER_PATHS = NO; - CLANG_CXX_LANGUAGE_STANDARD = "gnu++0x"; - CLANG_CXX_LIBRARY = "libc++"; - CLANG_ENABLE_MODULES = YES; - CLANG_ENABLE_OBJC_ARC = YES; - CLANG_WARN_BOOL_CONVERSION = YES; - CLANG_WARN_CONSTANT_CONVERSION = YES; - CLANG_WARN_DIRECT_OBJC_ISA_USAGE = YES_ERROR; - CLANG_WARN_EMPTY_BODY = YES; - CLANG_WARN_ENUM_CONVERSION = YES; - CLANG_WARN_INT_CONVERSION = YES; - CLANG_WARN_OBJC_ROOT_CLASS = YES_ERROR; - CLANG_WARN_UNREACHABLE_CODE = YES; - CLANG_WARN__DUPLICATE_METHOD_MATCH = YES; - COPY_PHASE_STRIP = NO; - DEBUG_INFORMATION_FORMAT = dwarf; - ENABLE_STRICT_OBJC_MSGSEND = YES; - ENABLE_TESTABILITY = YES; - GCC_C_LANGUAGE_STANDARD = gnu99; - GCC_DYNAMIC_NO_PIC = NO; - GCC_NO_COMMON_BLOCKS = YES; - GCC_OPTIMIZATION_LEVEL = 0; - GCC_PREPROCESSOR_DEFINITIONS = ( - "DEBUG=1", - "$(inherited)", - ); - GCC_WARN_64_TO_32_BIT_CONVERSION = YES; - GCC_WARN_ABOUT_RETURN_TYPE = YES_ERROR; - GCC_WARN_UNDECLARED_SELECTOR = YES; - GCC_WARN_UNINITIALIZED_AUTOS = YES_AGGRESSIVE; - GCC_WARN_UNUSED_FUNCTION = YES; - GCC_WARN_UNUSED_VARIABLE = YES; - HEADER_SEARCH_PATHS = /opt/local/include; - MACOSX_DEPLOYMENT_TARGET = 10.11; - MTL_ENABLE_DEBUG_INFO = YES; - ONLY_ACTIVE_ARCH = YES; - SDKROOT = macosx; - }; - name = Debug; - }; - 5510184E1BD63CB300990BFF /* Release */ = { - isa = XCBuildConfiguration; - buildSettings = { - ALWAYS_SEARCH_USER_PATHS = NO; - CLANG_CXX_LANGUAGE_STANDARD = "gnu++0x"; - CLANG_CXX_LIBRARY = "libc++"; - CLANG_ENABLE_MODULES = YES; - CLANG_ENABLE_OBJC_ARC = YES; - CLANG_WARN_BOOL_CONVERSION = YES; - CLANG_WARN_CONSTANT_CONVERSION = YES; - CLANG_WARN_DIRECT_OBJC_ISA_USAGE = YES_ERROR; - CLANG_WARN_EMPTY_BODY = YES; - CLANG_WARN_ENUM_CONVERSION = YES; - CLANG_WARN_INT_CONVERSION = YES; - CLANG_WARN_OBJC_ROOT_CLASS = YES_ERROR; - CLANG_WARN_UNREACHABLE_CODE = YES; - CLANG_WARN__DUPLICATE_METHOD_MATCH = YES; - COPY_PHASE_STRIP = NO; - DEBUG_INFORMATION_FORMAT = "dwarf-with-dsym"; - ENABLE_NS_ASSERTIONS = NO; - ENABLE_STRICT_OBJC_MSGSEND = YES; - GCC_C_LANGUAGE_STANDARD = gnu99; - GCC_NO_COMMON_BLOCKS = YES; - GCC_WARN_64_TO_32_BIT_CONVERSION = YES; - GCC_WARN_ABOUT_RETURN_TYPE = YES_ERROR; - GCC_WARN_UNDECLARED_SELECTOR = YES; - GCC_WARN_UNINITIALIZED_AUTOS = YES_AGGRESSIVE; - GCC_WARN_UNUSED_FUNCTION = YES; - GCC_WARN_UNUSED_VARIABLE = YES; - HEADER_SEARCH_PATHS = /opt/local/include; - MACOSX_DEPLOYMENT_TARGET = 10.11; - MTL_ENABLE_DEBUG_INFO = NO; - SDKROOT = macosx; - }; - name = Release; - }; - 551018501BD63CB300990BFF /* Debug */ = { - isa = XCBuildConfiguration; - buildSettings = { - GCC_PREPROCESSOR_DEFINITIONS = ( - "$(inherited)", - FILE_FORMAT_UPPER_TRIANGULAR_CSV, - USE_COEFFICIENTS, - STORE_DIAMETERS, - PRINT_PERSISTENCE_PAIRS, - ); - PRODUCT_NAME = "$(TARGET_NAME)"; - }; - name = Debug; - }; - 551018511BD63CB300990BFF /* Release */ = { - isa = XCBuildConfiguration; - buildSettings = { - PRODUCT_NAME = "$(TARGET_NAME)"; - }; - name = Release; - }; -/* End XCBuildConfiguration section */ - -/* Begin XCConfigurationList section */ - 551018431BD63CB300990BFF /* Build configuration list for PBXProject "ripser" */ = { - isa = XCConfigurationList; - buildConfigurations = ( - 5510184D1BD63CB300990BFF /* Debug */, - 5510184E1BD63CB300990BFF /* Release */, - ); - defaultConfigurationIsVisible = 0; - defaultConfigurationName = Release; - }; - 5510184F1BD63CB300990BFF /* Build configuration list for PBXNativeTarget "ripser" */ = { - isa = XCConfigurationList; - buildConfigurations = ( - 551018501BD63CB300990BFF /* Debug */, - 551018511BD63CB300990BFF /* Release */, - ); - defaultConfigurationIsVisible = 0; - defaultConfigurationName = Release; - }; -/* End XCConfigurationList section */ - }; - rootObject = 551018401BD63CB300990BFF /* Project object */; -} |