diff options
Diffstat (limited to 'benchmarks/sphere_3_192')
-rw-r--r-- | benchmarks/sphere_3_192/dionysus.txt | 28 | ||||
-rw-r--r-- | benchmarks/sphere_3_192/dipha.txt | 58 | ||||
-rw-r--r-- | benchmarks/sphere_3_192/gudhi.txt | 18 | ||||
-rw-r--r-- | benchmarks/sphere_3_192/phat.txt | 17 | ||||
-rw-r--r-- | benchmarks/sphere_3_192/ripser.txt | 268 |
5 files changed, 0 insertions, 389 deletions
diff --git a/benchmarks/sphere_3_192/dionysus.txt b/benchmarks/sphere_3_192/dionysus.txt deleted file mode 100644 index 56e23d1..0000000 --- a/benchmarks/sphere_3_192/dionysus.txt +++ /dev/null @@ -1,28 +0,0 @@ -uli:Dionysus uli$ /usr/bin/time -l ~/Source/Dionysus/examples/cohomology/rips-pairwise-cohomology -s3 -p2 ~/Bitbucket/phat-paper/benchmark/point\ cloud/sphere_3_192_points.dat -Boundary matrix: -Cocycles: *.ccl -Vertices: -Diagram: -Simplex vector generated, size: 56050288 - -0% 10 20 30 40 50 60 70 80 90 100% -|----|----|----|----|----|----|----|----|----|----| -*************************************************** -Rips timer : Elapsed time [393.20] seconds -Persistence timer : Elapsed time [322.41] seconds -Total timer : Elapsed time [807.98] seconds - 843.40 real 787.80 user 26.13 sys -3240779776 maximum resident set size - 0 average shared memory size - 0 average unshared data size - 0 average unshared stack size - 4808144 page reclaims - 0 page faults - 0 swaps - 11 block input operations - 0 block output operations - 0 messages sent - 0 messages received - 0 signals received - 11585 voluntary context switches - 691823 involuntary context switches diff --git a/benchmarks/sphere_3_192/dipha.txt b/benchmarks/sphere_3_192/dipha.txt deleted file mode 100644 index 38cc112..0000000 --- a/benchmarks/sphere_3_192/dipha.txt +++ /dev/null @@ -1,58 +0,0 @@ -uli:dipha uli$ /usr/bin/time -l ~/Bitbucket/dipha/dipha --benchmark --upper_dim 3 --dual ~/Bitbucket/phat-paper/benchmark/dipha/sphere_3_192.complex /dev/null - -Input filename: -/Users/uli/Bitbucket/phat-paper/benchmark/dipha/sphere_3_192.complex - -upper_dim: 3 - -Number of processes used: -1 - -Detailed information for rank 0: - time prior mem peak mem bytes recv - 0.0s 3 MB 4 MB 0 MB complex.load_binary( input_filename, upper_dim ); - -Number of cells in input: -56050288 - 20.1s 4 MB 1714 MB 0 MB get_filtration_to_cell_map( complex, dualize, filtration_to_cell_map ); - 11.5s 431 MB 2756 MB 855 MB get_cell_to_filtration_map( complex.get_num_cells(), filtration_to_cell_map, cell_to_filtration_map ); - 1.9s 1713 MB 2756 MB 0 MB generate_unreduced_columns( complex, filtration_to_cell_map, cell_to_filtration_map, cur_dim, dualize, unreduced_columns ); - 0.0s 2144 MB 2756 MB 0 MB reduction_kernel( complex.get_num_cells(), unreduced_columns, reduced_columns ); - 1.7s 2145 MB 2756 MB 53 MB generate_unreduced_columns( complex, filtration_to_cell_map, cell_to_filtration_map, cur_dim, dualize, unreduced_columns ); - 0.1s 2226 MB 2756 MB 0 MB reduction_kernel( complex.get_num_cells(), unreduced_columns, reduced_columns ); - 35.9s 2244 MB 2809 MB 3349 MB generate_unreduced_columns( complex, filtration_to_cell_map, cell_to_filtration_map, cur_dim, dualize, unreduced_columns ); - 17.1s 1359 MB 2809 MB 0 MB reduction_kernel( complex.get_num_cells(), unreduced_columns, reduced_columns ); - 14.9s 943 MB 3638 MB 106 MB dipha::outputs::save_persistence_diagram( output_filename, complex, filtration_to_cell_map, reduced_columns, dualize, upper_dim ); - -Overall running time in seconds: -104.5 - -Reduction kernel running time in seconds: -17.2 - -Overall peak mem in GB of all ranks: -3.6 - -Individual peak mem in GB of per rank: -3.6 - -Maximal communication traffic (without sorting) in GB between any pair of nodes: -4.3 - -Total communication traffic (without sorting) in GB between all pairs of nodes: -4.3 - 104.51 real 71.06 user 25.97 sys -3815686144 maximum resident set size - 0 average shared memory size - 0 average unshared data size - 0 average unshared stack size - 8788553 page reclaims - 0 page faults - 0 swaps - 0 block input operations - 4 block output operations - 0 messages sent - 0 messages received - 0 signals received - 2337 voluntary context switches - 238131 involuntary context switches diff --git a/benchmarks/sphere_3_192/gudhi.txt b/benchmarks/sphere_3_192/gudhi.txt deleted file mode 100644 index 87763c8..0000000 --- a/benchmarks/sphere_3_192/gudhi.txt +++ /dev/null @@ -1,18 +0,0 @@ -uli:Gudhi_library_1.3.0 uli$ /usr/bin/time -l ~/Source/Gudhi_library_1.3.0/example/Persistent_cohomology/rips_persistence -d3 -p2 ~/Bitbucket/phat-paper/benchmark/point\ cloud/sphere_3_192_points.dat -o/dev/null -The complex contains 56050288 simplices - and has dimension 3 - 71.98 real 120.27 user 5.86 sys -2905890816 maximum resident set size - 0 average shared memory size - 0 average unshared data size - 0 average unshared stack size - 1535169 page reclaims - 129 page faults - 0 swaps - 0 block input operations - 0 block output operations - 0 messages sent - 0 messages received - 0 signals received - 1957 voluntary context switches - 168798 involuntary context switches diff --git a/benchmarks/sphere_3_192/phat.txt b/benchmarks/sphere_3_192/phat.txt deleted file mode 100644 index 3ebcfff..0000000 --- a/benchmarks/sphere_3_192/phat.txt +++ /dev/null @@ -1,17 +0,0 @@ -uli:phat uli$ /usr/bin/time -l ~/Bitbucket/phat/benchmark --primal --bit_tree_pivot_column --twist ~/Bitbucket/phat-paper/benchmark/sphere_3_192_coboundary.phat -/Users/uli/Bitbucket/phat-paper/benchmark/sphere_3_192_coboundary.phat, bit_tree_pivot_column, twist, primal, Reduction time: 2.649s - 16.91 real 12.22 user 4.38 sys -3742277632 maximum resident set size - 0 average shared memory size - 0 average unshared data size - 0 average unshared stack size - 1568913 page reclaims - 8 page faults - 0 swaps - 10 block input operations - 0 block output operations - 0 messages sent - 0 messages received - 0 signals received - 20 voluntary context switches - 13471 involuntary context switches diff --git a/benchmarks/sphere_3_192/ripser.txt b/benchmarks/sphere_3_192/ripser.txt deleted file mode 100644 index 60b7939..0000000 --- a/benchmarks/sphere_3_192/ripser.txt +++ /dev/null @@ -1,268 +0,0 @@ -uli:ripser uli$ c++ -std=c++11 ripser.cpp -o ripser -Ofast -D NDEBUG -D FILE_FORMAT_DIPHA -D PRINT_PERSISTENCE_PAIRS && /usr/bin/time -l ./ripser --top_dim 2 ~/Bitbucket/phat-paper/benchmark/dipha/sphere_3_192.complex -distance matrix with 192 points -distance matrix transformed to lower triangular form -value range: [0.00367531,2] -persistence intervals in dim 0: - [0,0.145018) - [0,0.0831521) - [0,0.115939) - [0,0.202564) - [0,0.0217315) - [0,0.127383) - [0,0.0387451) - [0,0.0623736) - [0,0.282169) - [0,0.126595) - [0,0.195722) - [0,0.0792212) - [0,0.149226) - [0,0.2286) - [0,0.197377) - [0,0.0651112) - [0,0.138674) - [0,0.147427) - [0,0.124774) - [0,0.293466) - [0,0.17493) - [0,0.131438) - [0,0.151643) - [0,0.208063) - [0,0.129741) - [0,0.127864) - [0,0.131638) - [0,0.0959033) - [0,0.150747) - [0,0.119187) - [0,0.0870489) - [0,0.165592) - [0,0.121955) - [0,0.1569) - [0,0.0433426) - [0,0.280629) - [0,0.0487061) - [0,0.0746054) - [0,0.0728647) - [0,0.0471186) - [0,0.0988752) - [0,0.111131) - [0,0.141823) - [0,0.249345) - [0,0.283881) - [0,0.0522132) - [0,0.157293) - [0,0.0496187) - [0,0.143151) - [0,0.135402) - [0,0.192733) - [0,0.057488) - [0,0.0311057) - [0,0.159282) - [0,0.109526) - [0,0.234112) - [0,0.084341) - [0,0.0593071) - [0,0.133033) - [0,0.240632) - [0,0.248879) - [0,0.134886) - [0,0.228917) - [0,0.249339) - [0,0.204544) - [0,0.048826) - [0,0.143085) - [0,0.231675) - [0,0.191661) - [0,0.0637053) - [0,0.0560443) - [0,0.142537) - [0,0.00367531) - [0,0.257997) - [0,0.037954) - [0,0.204208) - [0,0.201961) - [0,0.215759) - [0,0.162464) - [0,0.0692368) - [0,0.145725) - [0,0.205389) - [0,0.203812) - [0,0.15587) - [0,0.123527) - [0,0.108768) - [0,0.165314) - [0,0.0782455) - [0,0.0173134) - [0,0.176306) - [0,0.0741239) - [0,0.0831358) - [0,0.266592) - [0,0.0515157) - [0,0.223232) - [0,0.0120098) - [0,0.122089) - [0,0.147203) - [0,0.283562) - [0,0.304062) - [0,0.253227) - [0,0.164809) - [0,0.149017) - [0,0.133525) - [0,0.237571) - [0,0.0743236) - [0,0.0672609) - [0,0.218526) - [0,0.0559886) - [0,0.165907) - [0,0.0800348) - [0,0.192356) - [0,0.164815) - [0,0.142834) - [0,0.174172) - [0,0.0714516) - [0,0.227933) - [0,0.0702075) - [0,0.18428) - [0,0.0970981) - [0,0.133722) - [0,0.0753955) - [0,0.0884133) - [0,0.15244) - [0,0.157373) - [0,0.234969) - [0,0.173412) - [0,0.193791) - [0,0.147289) - [0,0.111798) - [0,0.277191) - [0,0.167455) - [0,0.189106) - [0,0.179609) - [0,0.297053) - [0,0.158413) - [0,0.165494) - [0,0.199673) - [0,0.227524) - [0,0.076909) - [0,0.332695) - [0,0.0802451) - [0,0.0994522) - [0,0.154095) - [0,0.274611) - [0,0.24348) - [0,0.207016) - [0,0.218561) - [0,0.270996) - [0,0.214018) - [0,0.323964) - [0,0.184757) - [0,0.193804) - [0,0.276431) - [0,0.175016) - [0,0.142152) - [0,0.0857401) - [0,0.207714) - [0,0.00391946) - [0,0.168587) - [0,0.192406) - [0,0.246491) - [0,0.148506) - [0,0.25725) - [0,0.165202) - [0,0.0814685) - [0,0.247042) - [0,0.0633425) - [0,0.253163) - [0,0.157251) - [0,0.285416) - [0,0.173586) - [0,0.210372) - [0,0.266635) - [0,0.316023) - [0,0.287316) - [0,0.264334) - [0,0.208851) - [0,0.277582) - [0,0.288591) - [0,0.231179) - [0,0.190642) - [0,0.24509) - [0,0.319493) - [0,0.207261) - [0,0.173684) - [0,0.264483) - [0,0.289189) - [0,0.23879) - [0,0.297933) - [0,0.268806) - [0, ) -persistence intervals in dim 1: - [0.542696,0.558863) - [0.531636,0.578093) - [0.530723,0.576869) - [0.463389,0.505345) - [0.445398,0.448892) - [0.443911,0.54761) - [0.431628,0.477277) - [0.413789,0.487379) - [0.412572,0.46308) - [0.411549,0.471715) - [0.409968,0.478461) - [0.386278,0.4922) - [0.381084,0.421374) - [0.377729,0.514046) - [0.377147,0.414788) - [0.377019,0.434385) - [0.374531,0.477153) - [0.370051,0.483155) - [0.361715,0.403181) - [0.354747,0.454956) - [0.352356,0.541947) - [0.350913,0.369543) - [0.35058,0.580726) - [0.347806,0.638039) - [0.347388,0.559978) - [0.344005,0.387193) - [0.34298,0.65758) - [0.339394,0.463666) - [0.33836,0.350411) - [0.33392,0.35111) - [0.33364,0.3797) - [0.331259,0.356381) - [0.329066,0.386148) - [0.324571,0.343083) - [0.324159,0.399094) - [0.322683,0.482958) - [0.318032,0.417462) - [0.317521,0.349622) - [0.316534,0.682559) - [0.309419,0.37151) - [0.309336,0.310216) - [0.308779,0.346297) - [0.304761,0.647803) - [0.301986,0.478334) - [0.301045,0.303943) - [0.29997,0.311993) - [0.298341,0.360737) - [0.279016,0.301331) - [0.2576,0.373749) - [0.253337,0.292286) - [0.24546,0.248903) - [0.240869,0.288747) - [0.189652,0.197515) -persistence intervals in dim 2: - [0.720484,1.65562) - 2.22 real 2.09 user 0.11 sys - 182439936 maximum resident set size - 0 average shared memory size - 0 average unshared data size - 0 average unshared stack size - 44546 page reclaims - 9 page faults - 0 swaps - 0 block input operations - 0 block output operations - 0 messages sent - 0 messages received - 0 signals received - 1 voluntary context switches - 1307 involuntary context switches |