Fix bibliography for sphinx

13 files changed, 12 insertions, 86 deletions

diff --git a/src/python/doc/alpha_complex_user.rst b/src/python/doc/alpha_complex_user.rst
index 265a82d2..c65e62c8 100644
--- a/src/python/doc/alpha_complex_user.rst
+++ b/src/python/doc/alpha_complex_user.rst
@@ -10,9 +10,8 @@ Definition
 .. include:: alpha_complex_sum.inc
 
 `AlphaComplex` is constructing a :doc:`SimplexTree <simplex_tree_ref>` using
-`Delaunay Triangulation  <http://doc.cgal.org/latest/Triangulation/index.html#Chapter_Triangulations>`_ 
-:cite:`cgal:hdj-t-19b` from `CGAL <http://www.cgal.org/>`_ (the Computational Geometry Algorithms Library
-:cite:`cgal:eb-19b`).
+`Delaunay Triangulation  <http://doc.cgal.org/latest/Triangulation/index.html#Chapter_Triangulations>`_
+from `CGAL <http://www.cgal.org/>`_ (the Computational Geometry Algorithms Library).
 
 Remarks
 ^^^^^^^
@@ -203,9 +202,3 @@ the program output is:
    [4, 5, 6] -> 22.74
    [3, 6] -> 30.25
 
-CGAL citations
---------------
-
-.. bibliography:: ../../biblio/how_to_cite_cgal.bib
-   :filter: docname in docnames
-   :style: unsrt
diff --git a/src/python/doc/bottleneck_distance_user.rst b/src/python/doc/bottleneck_distance_user.rst
index 206fcb63..89da89d3 100644
--- a/src/python/doc/bottleneck_distance_user.rst
+++ b/src/python/doc/bottleneck_distance_user.rst
@@ -66,9 +66,3 @@ The output is:
     Bottleneck distance approximation = 0.81
     Bottleneck distance value = 0.75
 
-Bibliography
-------------
-
-.. bibliography:: ../../biblio/bibliography.bib
-   :filter: docname in docnames
-   :style: unsrt
diff --git a/src/python/doc/cubical_complex_user.rst b/src/python/doc/cubical_complex_user.rst
index e8c94bf6..e4733653 100644
--- a/src/python/doc/cubical_complex_user.rst
+++ b/src/python/doc/cubical_complex_user.rst
@@ -158,10 +158,3 @@ Examples.
 ---------
 
 End user programs are available in python/example/ folder.
-
-Bibliography
-------------
-
-.. bibliography:: ../../biblio/bibliography.bib
-   :filter: docname in docnames
-   :style: unsrt
diff --git a/src/python/doc/index.rst b/src/python/doc/index.rst
index c153cdfc..13e51047 100644
--- a/src/python/doc/index.rst
+++ b/src/python/doc/index.rst
@@ -86,10 +86,3 @@ Point cloud utilities
 *********************
 
 .. include:: point_cloud_sum.inc
-
-Bibliography
-************
-
-.. bibliography:: ../../biblio/bibliography.bib
-   :filter: docname in docnames
-   :style: unsrt
diff --git a/src/python/doc/nerve_gic_complex_ref.rst b/src/python/doc/nerve_gic_complex_ref.rst
index 6a81b7af..abde2e8c 100644
--- a/src/python/doc/nerve_gic_complex_ref.rst
+++ b/src/python/doc/nerve_gic_complex_ref.rst
@@ -12,10 +12,3 @@ Cover complexes reference manual
    :show-inheritance:
 
    .. automethod:: gudhi.CoverComplex.__init__
-
-Bibliography
-------------
-
-.. bibliography:: ../../biblio/bibliography.bib
-   :filter: docname in docnames
-   :style: unsrt
diff --git a/src/python/doc/nerve_gic_complex_user.rst b/src/python/doc/nerve_gic_complex_user.rst
index f709ce91..9101f45d 100644
--- a/src/python/doc/nerve_gic_complex_user.rst
+++ b/src/python/doc/nerve_gic_complex_user.rst
@@ -313,10 +313,3 @@ the program outputs again SC.dot which gives the following visualization after u
     :alt: Visualization with neato
 
     Visualization with neato
-
-Bibliography
-------------
-
-.. bibliography:: ../../biblio/bibliography.bib
-   :filter: docname in docnames
-   :style: unsrt
diff --git a/src/python/doc/persistent_cohomology_user.rst b/src/python/doc/persistent_cohomology_user.rst
index 506fa3a7..4d743aac 100644
--- a/src/python/doc/persistent_cohomology_user.rst
+++ b/src/python/doc/persistent_cohomology_user.rst
@@ -111,10 +111,3 @@ We provide several example files: run these examples with -h for details on thei
     * :download:`rips_complex_diagram_persistence_from_distance_matrix_file_example.py <../example/rips_complex_diagram_persistence_from_distance_matrix_file_example.py>`
     * :download:`random_cubical_complex_persistence_example.py <../example/random_cubical_complex_persistence_example.py>`
     * :download:`tangential_complex_plain_homology_from_off_file_example.py <../example/tangential_complex_plain_homology_from_off_file_example.py>`
-
-Bibliography
-------------
-
-.. bibliography:: ../../biblio/bibliography.bib
-   :filter: docname in docnames
-   :style: unsrt
diff --git a/src/python/doc/rips_complex_user.rst b/src/python/doc/rips_complex_user.rst
index c4bbcfb6..8efb12e6 100644
--- a/src/python/doc/rips_complex_user.rst
+++ b/src/python/doc/rips_complex_user.rst
@@ -347,10 +347,3 @@ until dimension 1 - one skeleton graph in other words), the output is:
     points in the persistence diagram will be under the diagonal, and
     bottleneck distance and persistence graphical tool will not work properly,
     this is a known issue.
-
-Bibliography
-------------
-
-.. bibliography:: ../../biblio/bibliography.bib
-   :filter: docname in docnames
-   :style: unsrt
diff --git a/src/python/doc/simplex_tree_user.rst b/src/python/doc/simplex_tree_user.rst
index 1b272c35..3df7617f 100644
--- a/src/python/doc/simplex_tree_user.rst
+++ b/src/python/doc/simplex_tree_user.rst
@@ -66,10 +66,3 @@ The output is:
     ([1, 2], 4.0)
     ([1], 0.0)
     ([2], 4.0)
-
-Bibliography
-------------
-
-.. bibliography:: ../../biblio/bibliography.bib
-   :filter: docname in docnames
-   :style: unsrt
diff --git a/src/python/doc/tangential_complex_user.rst b/src/python/doc/tangential_complex_user.rst
index cf8199cc..3d45473b 100644
--- a/src/python/doc/tangential_complex_user.rst
+++ b/src/python/doc/tangential_complex_user.rst
@@ -194,11 +194,3 @@ The output is:
 
     Tangential contains 4 vertices.
     Inconsistencies has been fixed.
-
-
-Bibliography
-------------
-
-.. bibliography:: ../../biblio/bibliography.bib
-   :filter: docname in docnames
-   :style: unsrt
diff --git a/src/python/doc/wasserstein_distance_user.rst b/src/python/doc/wasserstein_distance_user.rst
index c24da74d..c443bab5 100644
--- a/src/python/doc/wasserstein_distance_user.rst
+++ b/src/python/doc/wasserstein_distance_user.rst
@@ -164,10 +164,3 @@ The output is:
     [[0.27916667 0.55416667]
      [0.7375     0.7625    ]
      [0.2375     0.2625    ]]
-
-Bibliography
-------------
-
-.. bibliography:: ../../biblio/bibliography.bib
-   :filter: docname in docnames
-   :style: unsrt
diff --git a/src/python/doc/witness_complex_user.rst b/src/python/doc/witness_complex_user.rst
index 799f5444..08dcd288 100644
--- a/src/python/doc/witness_complex_user.rst
+++ b/src/python/doc/witness_complex_user.rst
@@ -126,10 +126,3 @@ Example2: Computing persistence using strong relaxed witness complex
 Here is an example of constructing a strong witness complex filtration and computing persistence on it:
 
 * :download:`euclidean_strong_witness_complex_diagram_persistence_from_off_file_example.py <../example/euclidean_strong_witness_complex_diagram_persistence_from_off_file_example.py>`
-
-Bibliography
-------------
-
-.. bibliography:: ../../biblio/bibliography.bib
-   :filter: docname in docnames
-   :style: unsrt
diff --git a/src/python/doc/zbibliography.rst b/src/python/doc/zbibliography.rst
new file mode 100644
index 00000000..4c377b46
--- /dev/null
+++ b/src/python/doc/zbibliography.rst
@@ -0,0 +1,10 @@
+:orphan:
+
+.. To get rid of WARNING: document isn't included in any toctree
+
+Bibliography
+------------
+
+.. bibliography:: ../../biblio/bibliography.bib
+    :style: unsrt
+