diff options
Diffstat (limited to 'cmake')
| -rw-r--r-- | cmake/modules/FindCython.cmake | 44 | ||||
| -rw-r--r-- | cmake/modules/GUDHI_doxygen_target.cmake | 7 | ||||
| -rw-r--r-- | cmake/modules/GUDHI_third_party_libraries.cmake | 32 | ||||
| -rw-r--r-- | cmake/modules/GUDHI_user_version_target.cmake | 171 |
4 files changed, 119 insertions, 135 deletions
diff --git a/cmake/modules/FindCython.cmake b/cmake/modules/FindCython.cmake deleted file mode 100644 index 04aed1f8..00000000 --- a/cmake/modules/FindCython.cmake +++ /dev/null @@ -1,44 +0,0 @@ -# Find the Cython compiler. -# -# This code sets the following variables: -# -# CYTHON_EXECUTABLE -# -# See also UseCython.cmake - -#============================================================================= -# Copyright 2011 Kitware, Inc. -# -# Licensed under the Apache License, Version 2.0 (the "License"); -# you may not use this file except in compliance with the License. -# You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, software -# distributed under the License is distributed on an "AS IS" BASIS, -# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -# See the License for the specific language governing permissions and -# limitations under the License. -#============================================================================= - -# Use the Cython executable that lives next to the Python executable -# if it is a local installation. -find_package( PythonInterp ) -if( PYTHONINTERP_FOUND ) - get_filename_component( _python_path ${PYTHON_EXECUTABLE} PATH ) - find_program( CYTHON_EXECUTABLE - NAMES cython cython.bat cython3 - HINTS ${_python_path} - ) -else() - find_program( CYTHON_EXECUTABLE - NAMES cython cython.bat cython3 - ) -endif() - - -include( FindPackageHandleStandardArgs ) -FIND_PACKAGE_HANDLE_STANDARD_ARGS( Cython REQUIRED_VARS CYTHON_EXECUTABLE ) - -mark_as_advanced( CYTHON_EXECUTABLE ) diff --git a/cmake/modules/GUDHI_doxygen_target.cmake b/cmake/modules/GUDHI_doxygen_target.cmake index f3e2d9f5..9e10e566 100644 --- a/cmake/modules/GUDHI_doxygen_target.cmake +++ b/cmake/modules/GUDHI_doxygen_target.cmake @@ -3,14 +3,17 @@ find_package(Doxygen) if(DOXYGEN_FOUND) # configure_file(${CMAKE_CURRENT_SOURCE_DIR}/Doxyfile.in ${CMAKE_CURRENT_BINARY_DIR}/Doxyfile @ONLY) - #starting from cmake 3.9 the usage of DOXYGEN_EXECUTABLE is deprecated + # starting from cmake 3.9 the usage of DOXYGEN_EXECUTABLE is deprecated if(TARGET Doxygen::doxygen) get_property(DOXYGEN_EXECUTABLE TARGET Doxygen::doxygen PROPERTY IMPORTED_LOCATION) endif() add_custom_target(doxygen ${DOXYGEN_EXECUTABLE} ${GUDHI_USER_VERSION_DIR}/Doxyfile WORKING_DIRECTORY ${GUDHI_USER_VERSION_DIR} - DEPENDS ${GUDHI_USER_VERSION_DIR}/Doxyfile ${GUDHI_DOXYGEN_DEPENDENCY} COMMENT "Generating API documentation with Doxygen in ${GUDHI_USER_VERSION_DIR}/doc/html/" VERBATIM) + if(TARGET user_version) + # In dev version, doxygen target depends on user_version target. Not existing in user version + add_dependencies(doxygen user_version) + endif() endif(DOXYGEN_FOUND) diff --git a/cmake/modules/GUDHI_third_party_libraries.cmake b/cmake/modules/GUDHI_third_party_libraries.cmake index 7433f2f3..f03c2177 100644 --- a/cmake/modules/GUDHI_third_party_libraries.cmake +++ b/cmake/modules/GUDHI_third_party_libraries.cmake @@ -8,11 +8,9 @@ endif(NOT Boost_FOUND) find_package(GMP) if(GMP_FOUND) - message(STATUS "GMP_LIBRARIES = ${GMP_LIBRARIES}") INCLUDE_DIRECTORIES(${GMP_INCLUDE_DIR}) find_package(GMPXX) if(GMPXX_FOUND) - message(STATUS "GMPXX_LIBRARIES = ${GMPXX_LIBRARIES}") INCLUDE_DIRECTORIES(${GMPXX_INCLUDE_DIR}) endif() endif() @@ -79,7 +77,6 @@ endif(WITH_GUDHI_USE_TBB) set(CGAL_WITH_EIGEN3_VERSION 0.0.0) find_package(Eigen3 3.1.0) if (EIGEN3_FOUND) - message(STATUS "Eigen3 version: ${EIGEN3_VERSION}.") include( ${EIGEN3_USE_FILE} ) set(CGAL_WITH_EIGEN3_VERSION ${CGAL_VERSION}) endif (EIGEN3_FOUND) @@ -119,7 +116,34 @@ message(STATUS "boost library dirs:" ${Boost_LIBRARY_DIRS}) # Find the correct Python interpreter. # Can be set with -DPYTHON_EXECUTABLE=/usr/bin/python3 or -DPython_ADDITIONAL_VERSIONS=3 for instance. -find_package(Cython) +find_package( PythonInterp ) + +# find_python_module tries to import module in Python interpreter and to retrieve its version number +# returns ${PYTHON_MODULE_NAME_UP}_VERSION and ${PYTHON_MODULE_NAME_UP}_FOUND +function( find_python_module PYTHON_MODULE_NAME ) + string(TOUPPER ${PYTHON_MODULE_NAME} PYTHON_MODULE_NAME_UP) + execute_process( + COMMAND ${PYTHON_EXECUTABLE} -c "import ${PYTHON_MODULE_NAME}; print(${PYTHON_MODULE_NAME}.__version__)" + RESULT_VARIABLE PYTHON_MODULE_RESULT + OUTPUT_VARIABLE PYTHON_MODULE_VERSION + ERROR_VARIABLE PYTHON_MODULE_ERROR) + if(PYTHON_MODULE_RESULT EQUAL 0) + # Remove carriage return + string(STRIP ${PYTHON_MODULE_VERSION} PYTHON_MODULE_VERSION) + set(${PYTHON_MODULE_NAME_UP}_VERSION ${PYTHON_MODULE_VERSION} PARENT_SCOPE) + set(${PYTHON_MODULE_NAME_UP}_FOUND TRUE PARENT_SCOPE) + else() + unset(${PYTHON_MODULE_NAME_UP}_VERSION PARENT_SCOPE) + set(${PYTHON_MODULE_NAME_UP}_FOUND FALSE PARENT_SCOPE) + endif() +endfunction( find_python_module ) + +if( PYTHONINTERP_FOUND ) + find_python_module("cython") + find_python_module("pytest") + find_python_module("matplotlib") + find_python_module("numpy") +endif() if(NOT GUDHI_CYTHON_PATH) message(FATAL_ERROR "ERROR: GUDHI_CYTHON_PATH is not valid.") diff --git a/cmake/modules/GUDHI_user_version_target.cmake b/cmake/modules/GUDHI_user_version_target.cmake index 1205966a..d43a6fa6 100644 --- a/cmake/modules/GUDHI_user_version_target.cmake +++ b/cmake/modules/GUDHI_user_version_target.cmake @@ -1,94 +1,95 @@ -# Some functionnalities requires CMake 2.8.11 minimum -if (NOT CMAKE_VERSION VERSION_LESS 2.8.11) +# Definition of the custom target user_version +add_custom_target(user_version) - # Definition of the custom target user_version - add_custom_target(user_version) - - if(DEFINED USER_VERSION_DIR) - # set the GUDHI_USER_VERSION_DIR with USER_VERSION_DIR defined by the user - set(GUDHI_USER_VERSION_DIR ${CMAKE_CURRENT_BINARY_DIR}/${USER_VERSION_DIR}) - else() - # set the GUDHI_USER_VERSION_DIR with timestamp and Gudhi version number - string(TIMESTAMP DATE_AND_TIME "%Y-%m-%d-%H-%M-%S") - set(GUDHI_USER_VERSION_DIR ${CMAKE_CURRENT_BINARY_DIR}/${DATE_AND_TIME}_GUDHI_${GUDHI_VERSION}) - endif() +if(DEFINED USER_VERSION_DIR) + # set the GUDHI_USER_VERSION_DIR with USER_VERSION_DIR defined by the user + set(GUDHI_USER_VERSION_DIR ${CMAKE_CURRENT_BINARY_DIR}/${USER_VERSION_DIR}) +else() + # set the GUDHI_USER_VERSION_DIR with timestamp and Gudhi version number + string(TIMESTAMP DATE_AND_TIME "%Y-%m-%d-%H-%M-%S") + set(GUDHI_USER_VERSION_DIR ${CMAKE_CURRENT_BINARY_DIR}/${DATE_AND_TIME}_GUDHI_${GUDHI_VERSION}) +endif() - set(GUDHI_DOXYGEN_DEPENDENCY user_version) +add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E + make_directory ${GUDHI_USER_VERSION_DIR} + COMMENT "user_version creation in ${GUDHI_USER_VERSION_DIR}") - add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E - make_directory ${GUDHI_USER_VERSION_DIR} - COMMENT "user_version creation in ${GUDHI_USER_VERSION_DIR}") - - add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E - copy ${CMAKE_SOURCE_DIR}/Conventions.txt ${GUDHI_USER_VERSION_DIR}/Conventions.txt) - add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E - copy ${CMAKE_SOURCE_DIR}/README ${GUDHI_USER_VERSION_DIR}/README) - add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E - copy ${CMAKE_SOURCE_DIR}/COPYING ${GUDHI_USER_VERSION_DIR}/COPYING) - add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E - copy ${CMAKE_SOURCE_DIR}/src/CMakeLists.txt ${GUDHI_USER_VERSION_DIR}/CMakeLists.txt) - add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E - copy ${CMAKE_SOURCE_DIR}/src/Doxyfile ${GUDHI_USER_VERSION_DIR}/Doxyfile) - add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E - copy ${CMAKE_SOURCE_DIR}/src/GUDHIConfigVersion.cmake.in ${GUDHI_USER_VERSION_DIR}/GUDHIConfigVersion.cmake.in) - add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E - copy ${CMAKE_SOURCE_DIR}/src/GUDHIConfig.cmake.in ${GUDHI_USER_VERSION_DIR}/GUDHIConfig.cmake.in) - add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E - copy ${CMAKE_SOURCE_DIR}/CMakeGUDHIVersion.txt ${GUDHI_USER_VERSION_DIR}/CMakeGUDHIVersion.txt) - - add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E - copy_directory ${CMAKE_SOURCE_DIR}/biblio ${GUDHI_USER_VERSION_DIR}/biblio) - add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E - copy_directory ${CMAKE_SOURCE_DIR}/src/cython ${GUDHI_USER_VERSION_DIR}/cython) - add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E - copy_directory ${CMAKE_SOURCE_DIR}/data ${GUDHI_USER_VERSION_DIR}/data) - add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E - copy_directory ${CMAKE_SOURCE_DIR}/src/cmake ${GUDHI_USER_VERSION_DIR}/cmake) - add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E - copy_directory ${CMAKE_SOURCE_DIR}/src/GudhUI ${GUDHI_USER_VERSION_DIR}/GudhUI) - - set(GUDHI_DIRECTORIES "doc;example;concept;utilities") - if (CGAL_VERSION VERSION_LESS 4.11.0) - set(GUDHI_INCLUDE_DIRECTORIES "include/gudhi;include/Miniball;include/gudhi_patches") - else () - set(GUDHI_INCLUDE_DIRECTORIES "include/gudhi;include/Miniball") - endif () +foreach(GUDHI_MODULE ${GUDHI_MODULES_FULL_LIST}) + set(GUDHI_DOXYGEN_IMAGE_PATH "${GUDHI_DOXYGEN_IMAGE_PATH} doc/${GUDHI_MODULE}/ \\ \n") +endforeach(GUDHI_MODULE ${GUDHI_MODULES_FULL_LIST}) - foreach(GUDHI_MODULE ${GUDHI_MODULES_FULL_LIST}) - foreach(GUDHI_DIRECTORY ${GUDHI_DIRECTORIES}) - # Find files - file(GLOB GUDHI_FILES ${CMAKE_SOURCE_DIR}/src/${GUDHI_MODULE}/${GUDHI_DIRECTORY}/*) +# Generate setup.py file to cythonize Gudhi - This file must be named setup.py by convention +configure_file(${CMAKE_SOURCE_DIR}/src/Doxyfile.in "${CMAKE_CURRENT_BINARY_DIR}/src/Doxyfile" @ONLY) - foreach(GUDHI_FILE ${GUDHI_FILES}) - get_filename_component(GUDHI_FILE_NAME ${GUDHI_FILE} NAME) - # GUDHI_FILE can be a file or a directory - if(IS_DIRECTORY ${GUDHI_FILE}) - add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E - copy_directory ${GUDHI_FILE} ${GUDHI_USER_VERSION_DIR}/${GUDHI_DIRECTORY}/${GUDHI_MODULE}/${GUDHI_FILE_NAME}) - else() - add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E - copy ${GUDHI_FILE} ${GUDHI_USER_VERSION_DIR}/${GUDHI_DIRECTORY}/${GUDHI_MODULE}/${GUDHI_FILE_NAME}) - endif() - endforeach() - endforeach(GUDHI_DIRECTORY ${GUDHI_DIRECTORIES}) +add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E + copy ${CMAKE_CURRENT_BINARY_DIR}/src/Doxyfile ${GUDHI_USER_VERSION_DIR}/Doxyfile) - foreach(GUDHI_INCLUDE_DIRECTORY ${GUDHI_INCLUDE_DIRECTORIES}) - # include files - file(GLOB GUDHI_INCLUDE_FILES ${CMAKE_SOURCE_DIR}/src/${GUDHI_MODULE}/${GUDHI_INCLUDE_DIRECTORY}/*) +add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E + copy ${CMAKE_SOURCE_DIR}/Conventions.txt ${GUDHI_USER_VERSION_DIR}/Conventions.txt) +add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E + copy ${CMAKE_SOURCE_DIR}/README ${GUDHI_USER_VERSION_DIR}/README) +add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E + copy ${CMAKE_SOURCE_DIR}/COPYING ${GUDHI_USER_VERSION_DIR}/COPYING) +add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E + copy ${CMAKE_SOURCE_DIR}/src/CMakeLists.txt ${GUDHI_USER_VERSION_DIR}/CMakeLists.txt) +add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E + copy ${CMAKE_SOURCE_DIR}/src/GUDHIConfigVersion.cmake.in ${GUDHI_USER_VERSION_DIR}/GUDHIConfigVersion.cmake.in) +add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E + copy ${CMAKE_SOURCE_DIR}/src/GUDHIConfig.cmake.in ${GUDHI_USER_VERSION_DIR}/GUDHIConfig.cmake.in) +add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E + copy ${CMAKE_SOURCE_DIR}/CMakeGUDHIVersion.txt ${GUDHI_USER_VERSION_DIR}/CMakeGUDHIVersion.txt) - foreach(GUDHI_INCLUDE_FILE ${GUDHI_INCLUDE_FILES}) - get_filename_component(GUDHI_INCLUDE_FILE_NAME ${GUDHI_INCLUDE_FILE} NAME) - # GUDHI_INCLUDE_FILE can be a file or a directory - if(IS_DIRECTORY ${GUDHI_INCLUDE_FILE}) - add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E - copy_directory ${GUDHI_INCLUDE_FILE} ${GUDHI_USER_VERSION_DIR}/${GUDHI_INCLUDE_DIRECTORY}/${GUDHI_INCLUDE_FILE_NAME}) - else() - add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E - copy ${GUDHI_INCLUDE_FILE} ${GUDHI_USER_VERSION_DIR}/${GUDHI_INCLUDE_DIRECTORY}/${GUDHI_INCLUDE_FILE_NAME}) - endif() - endforeach() - endforeach(GUDHI_INCLUDE_DIRECTORY ${GUDHI_INCLUDE_DIRECTORIES}) +add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E + copy_directory ${CMAKE_SOURCE_DIR}/biblio ${GUDHI_USER_VERSION_DIR}/biblio) +add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E + copy_directory ${CMAKE_SOURCE_DIR}/src/cython ${GUDHI_USER_VERSION_DIR}/cython) +add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E + copy_directory ${CMAKE_SOURCE_DIR}/data ${GUDHI_USER_VERSION_DIR}/data) +add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E + copy_directory ${CMAKE_SOURCE_DIR}/src/cmake ${GUDHI_USER_VERSION_DIR}/cmake) +add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E + copy_directory ${CMAKE_SOURCE_DIR}/src/GudhUI ${GUDHI_USER_VERSION_DIR}/GudhUI) - endforeach(GUDHI_MODULE ${GUDHI_MODULES_FULL_LIST}) +set(GUDHI_DIRECTORIES "doc;example;concept;utilities") +if (CGAL_VERSION VERSION_LESS 4.11.0) + set(GUDHI_INCLUDE_DIRECTORIES "include/gudhi;include/gudhi_patches") +else () + set(GUDHI_INCLUDE_DIRECTORIES "include/gudhi") +endif () -endif() +foreach(GUDHI_MODULE ${GUDHI_MODULES_FULL_LIST}) + foreach(GUDHI_DIRECTORY ${GUDHI_DIRECTORIES}) + # Find files + file(GLOB GUDHI_FILES ${CMAKE_SOURCE_DIR}/src/${GUDHI_MODULE}/${GUDHI_DIRECTORY}/*) + + foreach(GUDHI_FILE ${GUDHI_FILES}) + get_filename_component(GUDHI_FILE_NAME ${GUDHI_FILE} NAME) + # GUDHI_FILE can be a file or a directory + if(IS_DIRECTORY ${GUDHI_FILE}) + add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E + copy_directory ${GUDHI_FILE} ${GUDHI_USER_VERSION_DIR}/${GUDHI_DIRECTORY}/${GUDHI_MODULE}/${GUDHI_FILE_NAME}) + else() + add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E + copy ${GUDHI_FILE} ${GUDHI_USER_VERSION_DIR}/${GUDHI_DIRECTORY}/${GUDHI_MODULE}/${GUDHI_FILE_NAME}) + endif() + endforeach() + endforeach(GUDHI_DIRECTORY ${GUDHI_DIRECTORIES}) + + foreach(GUDHI_INCLUDE_DIRECTORY ${GUDHI_INCLUDE_DIRECTORIES}) + # include files + file(GLOB GUDHI_INCLUDE_FILES ${CMAKE_SOURCE_DIR}/src/${GUDHI_MODULE}/${GUDHI_INCLUDE_DIRECTORY}/*) + + foreach(GUDHI_INCLUDE_FILE ${GUDHI_INCLUDE_FILES}) + get_filename_component(GUDHI_INCLUDE_FILE_NAME ${GUDHI_INCLUDE_FILE} NAME) + # GUDHI_INCLUDE_FILE can be a file or a directory + if(IS_DIRECTORY ${GUDHI_INCLUDE_FILE}) + add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E + copy_directory ${GUDHI_INCLUDE_FILE} ${GUDHI_USER_VERSION_DIR}/${GUDHI_INCLUDE_DIRECTORY}/${GUDHI_INCLUDE_FILE_NAME}) + else() + add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E + copy ${GUDHI_INCLUDE_FILE} ${GUDHI_USER_VERSION_DIR}/${GUDHI_INCLUDE_DIRECTORY}/${GUDHI_INCLUDE_FILE_NAME}) + endif() + endforeach() + endforeach(GUDHI_INCLUDE_DIRECTORY ${GUDHI_INCLUDE_DIRECTORIES}) + +endforeach(GUDHI_MODULE ${GUDHI_MODULES_FULL_LIST})
\ No newline at end of file |