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+/* This file is part of the Gudhi Library. The Gudhi library
+ * (Geometric Understanding in Higher Dimensions) is a generic C++
+ * library for computational topology.
+ *
+ * Author: Francois Godi
+ *
+ * Copyright (C) 2015 INRIA
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+
+#ifndef BOTTLENECK_H_
+#define BOTTLENECK_H_
+
+#include <gudhi/Graph_matching.h>
+
+#include <vector>
+#include <algorithm> // for max
+#include <limits> // for numeric_limits
+
+#include <cmath>
+
+namespace Gudhi {
+
+namespace persistence_diagram {
+
+double bottleneck_distance_approx(Persistence_graph& g, double e) {
+ double b_lower_bound = 0.;
+ double b_upper_bound = g.diameter_bound();
+ const double alpha = std::pow(g.size(), 1. / 5.);
+ Graph_matching m(g);
+ Graph_matching biggest_unperfect(g);
+ while (b_upper_bound - b_lower_bound > 2 * e) {
+ double step = b_lower_bound + (b_upper_bound - b_lower_bound) / alpha;
+ if (step <= b_lower_bound || step >= b_upper_bound) // Avoid precision problem
+ break;
+ m.set_r(step);
+ while (m.multi_augment()) {}; // compute a maximum matching (in the graph corresponding to the current r)
+ if (m.perfect()) {
+ m = biggest_unperfect;
+ b_upper_bound = step;
+ } else {
+ biggest_unperfect = m;
+ b_lower_bound = step;
+ }
+ }
+ return (b_lower_bound + b_upper_bound) / 2.;
+}
+
+double bottleneck_distance_exact(Persistence_graph& g) {
+ std::vector<double> sd = g.sorted_distances();
+ long lower_bound_i = 0;
+ long upper_bound_i = sd.size() - 1;
+ const double alpha = std::pow(g.size(), 1. / 5.);
+ Graph_matching m(g);
+ Graph_matching biggest_unperfect(g);
+ while (lower_bound_i != upper_bound_i) {
+ long step = lower_bound_i + static_cast<long> ((upper_bound_i - lower_bound_i - 1) / alpha);
+ m.set_r(sd.at(step));
+ while (m.multi_augment()) {}; // compute a maximum matching (in the graph corresponding to the current r)
+ if (m.perfect()) {
+ m = biggest_unperfect;
+ upper_bound_i = step;
+ } else {
+ biggest_unperfect = m;
+ lower_bound_i = step + 1;
+ }
+ }
+ return sd.at(lower_bound_i);
+}
+
+/** \brief Function to compute the Bottleneck distance between two persistence diagrams.
+ *
+ * \tparam Persistence_diagram1,Persistence_diagram2
+ * models of the concept `PersistenceDiagram`.
+ * \param[in] e
+ * \parblock
+ * If `e` is 0, this uses an expensive algorithm to compute the exact distance.
+ *
+ * If `e` is not 0, it asks for an additive `e`-approximation, and currently
+ * also allows a small multiplicative error (the last 2 or 3 bits of the
+ * mantissa may be wrong). This version of the algorithm takes advantage of the
+ * limited precision of `double` and is usually a lot faster to compute,
+ * whatever the value of `e`.
+ *
+ * Thus, by default, `e` is the smallest positive double.
+ * \endparblock
+ *
+ * \ingroup bottleneck_distance
+ */
+template<typename Persistence_diagram1, typename Persistence_diagram2>
+double bottleneck_distance(const Persistence_diagram1 &diag1, const Persistence_diagram2 &diag2,
+ double e = std::numeric_limits<double>::min()) {
+ Persistence_graph g(diag1, diag2, e);
+ if (g.bottleneck_alive() == std::numeric_limits<double>::infinity())
+ return std::numeric_limits<double>::infinity();
+ return std::max(g.bottleneck_alive(), e == 0. ? bottleneck_distance_exact(g) : bottleneck_distance_approx(g, e));
+}
+
+} // namespace persistence_diagram
+
+} // namespace Gudhi
+
+#endif // BOTTLENECK_H_