Merge commit '94eb1f7db4421e324a827590f60aa236af56666c' into dev

* commit '94eb1f7db4421e324a827590f60aa236af56666c':
  coboundary enumerator cleanup
  code cleanup pop_pivot
  fixed size_t / index_t conversion warnings
  updated and cleaned up readme
  renamed variables, changing "face" to "facet"
  benchmark moved to repository "ripser-benchmark"
  updated readme, reflecting the transition to WebAssembly for Ripser Live

# Conflicts:
#	benchmarks/Dockerfile
#	benchmarks/output/clifford_torus_50000.ripser.txt
#	benchmarks/output/dragon-2.ripser-no-emergent.txt
#	benchmarks/output/dragon-2.ripser.txt
#	benchmarks/output/fractal-r.ripser.txt
#	benchmarks/output/o3_1024.dipha-multicore.txt
#	benchmarks/output/o3_1024.dipha.txt
#	benchmarks/output/o3_1024.gudhi.txt
#	benchmarks/output/o3_1024.ripser-no-emergent.txt
#	benchmarks/output/o3_1024.ripser-store-reduced.txt
#	benchmarks/output/o3_1024.ripser-use-reduced.txt
#	benchmarks/output/o3_1024.ripser.txt
#	benchmarks/output/o3_4096.gudhi.txt
#	benchmarks/output/o3_4096.ripser-no-emergent.txt
#	benchmarks/output/o3_4096.ripser.txt
#	benchmarks/output/random.ripser-no-emergent.txt
#	benchmarks/output/random.ripser-store-reduced.txt
#	benchmarks/output/random.ripser-use-reduced.txt
#	benchmarks/output/random.ripser.txt
#	benchmarks/output/sphere_3_192.ripser-no-emergent.txt
#	benchmarks/output/sphere_3_192.ripser-store-reduced.txt
#	benchmarks/output/sphere_3_192.ripser-use-reduced.txt
#	benchmarks/output/sphere_3_192.ripser.txt

1 files changed, 0 insertions, 173 deletions

diff --git a/benchmarks/sphere_3_192/eirene.dim_1.out.txt b/benchmarks/sphere_3_192/eirene.dim_1.out.txt
deleted file mode 100644
index 3f205e1..0000000
--- a/benchmarks/sphere_3_192/eirene.dim_1.out.txt
+++ /dev/null
@@ -1,173 +0,0 @@
-
-
-Eirene Library for Homological Algebra
-Copyright (C) 2016, 2017  Gregory Henselman
-www.gregoryhenselman.org
-
-Eirene is free software: you can redistribute it and/or modify
-it under the terms of the GNU General Public License as published by
-the Free Software Foundation, either version 3 of the License, or
-(at your option) any later version.
-
-Eirene is distributed in the hope that it will be useful,
-but WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-GNU General Public License for more details.
-
-You should have received a copy of the GNU General Public License
-along with Eirene.  If not, see <http://www.gnu.org/licenses/>.
-
-			
-WELCOME TO EIRENE! 
-v0.3.5                 	
-				
-Please help us document Eirene's recent work! Bibtex entries and 
-contact information for teaching and outreach can be found at the 
-Eirene homepage, http://gregoryhenselman.org/eirene.
-
-
-Please Note: MultivariateStats.jl may not be installed. This package is required for 
-some operations pertaining to multidimensional scaling, but is not required. 
-To install, enter the following at the Julia prompt:
-
-Pkg.add("MultivariateStats")
-using MultivariateStats 
-
-
-WARNING: Base.String is deprecated, use AbstractString instead.
-  likely near no file:0
-WARNING: Base.String is deprecated, use AbstractString instead.
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-WARNING: Base.String is deprecated, use AbstractString instead.
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-WARNING: Base.String is deprecated, use AbstractString instead.
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-WARNING: Base.String is deprecated, use AbstractString instead.
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-WARNING: Base.String is deprecated, use AbstractString instead.
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-WARNING: Base.String is deprecated, use AbstractString instead.
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-WARNING: Base.String is deprecated, use AbstractString instead.
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-WARNING: Base.String is deprecated, use AbstractString instead.
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-WARNING: Base.String is deprecated, use AbstractString instead.
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-WARNING: Base.String is deprecated, use AbstractString instead.
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-WARNING: Base.String is deprecated, use AbstractString instead.
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-WARNING: Base.String is deprecated, use AbstractString instead.
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-WARNING: Base.String is deprecated, use AbstractString instead.
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-WARNING: Base.String is deprecated, use AbstractString instead.
-  likely near no file:0
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-WARNING: Base.String is deprecated, use AbstractString instead.
-  likely near no file:0
-WARNING: Base.String is deprecated, use AbstractString instead.
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-WARNING: Base.String is deprecated, use AbstractString instead.
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-WARNING: Base.String is deprecated, use AbstractString instead.
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-WARNING: Base.String is deprecated, use AbstractString instead.
-  likely near no file:0
-WARNING: Base.String is deprecated, use AbstractString instead.
-  likely near no file:0
-WARNING: Base.String is deprecated, use AbstractString instead.
-  likely near no file:0
-WARNING: Base.String is deprecated, use AbstractString instead.
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-WARNING: Base.String is deprecated, use AbstractString instead.
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-  likely near no file:0
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-  likely near no file:0
-WARNING: Base.String is deprecated, use AbstractString instead.
-  likely near no file:0
-WARNING: Base.String is deprecated, use AbstractString instead.
-  likely near no file:0
-WARNING: Base.String is deprecated, use AbstractString instead.
-  likely near no file:0
-WARNING: Base.String is deprecated, use AbstractString instead.
-  likely near no file:0
-WARNING: Base.String is deprecated, use AbstractString instead.
-  likely near no file:0
-WARNING: Base.String is deprecated, use AbstractString instead.
-  likely near no file:0
-WARNING: Base.String is deprecated, use AbstractString instead.
-  likely near no file:0
-WARNING: Base.String is deprecated, use AbstractString instead.
-  likely near no file:0
-WARNING: Base.String is deprecated, use AbstractString instead.
-  likely near no file:0
-WARNING: Base.String is deprecated, use AbstractString instead.
-  likely near no file:0
-WARNING: Base.String is deprecated, use AbstractString instead.
-  likely near no file:0
-WARNING: Base.String is deprecated, use AbstractString instead.
-  likely near no file:0
-WARNING: Base.String is deprecated, use AbstractString instead.
-  likely near no file:0
-in __persistF2#19__ at /Users/uli/Source/Eirene0_3_5/Eirene0_3_5.jl
-WARNING: Base.String is deprecated, use AbstractString instead.
-  likely near no file:0
-in __persistF2#19__ at /Users/uli/Source/Eirene0_3_5/Eirene0_3_5.jl
-WARNING: Base.String is deprecated, use AbstractString instead.
-  likely near no file:0
-in __persistF2#19__ at /Users/uli/Source/Eirene0_3_5/Eirene0_3_5.jl
-WARNING: Base.String is deprecated, use AbstractString instead.
-  likely near no file:0
-in __persistF2#19__ at /Users/uli/Source/Eirene0_3_5/Eirene0_3_5.jl
-WARNING: Base.String is deprecated, use AbstractString instead.
-  likely near no file:0
-in __persistF2#19__ at /Users/uli/Source/Eirene0_3_5/Eirene0_3_5.jl
-WARNING: Base.String is deprecated, use AbstractString instead.
-  likely near no file:0
-in __persistF2#19__ at /Users/uli/Source/Eirene0_3_5/Eirene0_3_5.jl
-WARNING: Base.String is deprecated, use AbstractString instead.
-  likely near no file:0
-in ezlabel at /Users/uli/Source/Eirene0_3_5/Eirene0_3_5.jl
-WARNING: Base.String is deprecated, use AbstractString instead.
-  likely near no file:0
-in ezlabel at /Users/uli/Source/Eirene0_3_5/Eirene0_3_5.jl
-WARNING: Base.String is deprecated, use AbstractString instead.
-  likely near no file:0
-in ezlabel at /Users/uli/Source/Eirene0_3_5/Eirene0_3_5.jl
-WARNING: Base.String is deprecated, use AbstractString instead.
-  likely near no file:0
-in ezlabel at /Users/uli/Source/Eirene0_3_5/Eirene0_3_5.jl
-Constructed Morse boundary operator, columns indexed by cells of dimension 1
-elapsed time: 5.240448941 seconds
-Constructed Morse boundary operator, columns indexed by cells of dimension 1
-Constructed Morse boundary operator, columns indexed by cells of dimension 2
-Constructed Morse boundary operator, columns indexed by cells of dimension 3
-elapsed time: 2.614149242 seconds
-       22.13 real        21.22 user         1.07 sys
- 632369152  maximum resident set size
-         0  average shared memory size
-         0  average unshared data size
-         0  average unshared stack size
-    263754  page reclaims
-         0  page faults
-         0  swaps
-        59  block input operations
-         0  block output operations
-         0  messages sent
-         0  messages received
-         5  signals received
-       120  voluntary context switches
-    165216  involuntary context switches