summaryrefslogtreecommitdiff
path: root/benchmarks
diff options
context:
space:
mode:
authorUlrich Bauer <ulrich.bauer@tum.de>2016-07-17 12:56:35 +0200
committerUlrich Bauer <ulrich.bauer@tum.de>2016-07-17 16:31:13 +0200
commit7fc669975e7fdb626ede64f2a13adec54cfbc0d2 (patch)
tree1a01898e9ad87a56ee3eb3d035cd0c65002070d9 /benchmarks
parent6765b225ea83ab7fbba32cddff6e92012fbd833d (diff)
removed unnecessary files
Diffstat (limited to 'benchmarks')
-rw-r--r--benchmarks/benchmarks.txt10
-rw-r--r--benchmarks/examples.txt4
-rw-r--r--benchmarks/sphere_3_192/dionysus.txt28
-rw-r--r--benchmarks/sphere_3_192/dipha.txt58
-rw-r--r--benchmarks/sphere_3_192/gudhi.txt18
-rw-r--r--benchmarks/sphere_3_192/phat.txt17
-rw-r--r--benchmarks/sphere_3_192/ripser.txt268
-rw-r--r--benchmarks/sphere_3_64/dionysus.txt28
-rw-r--r--benchmarks/sphere_3_64/dipha.txt58
-rw-r--r--benchmarks/sphere_3_64/gudhi.txt18
-rw-r--r--benchmarks/sphere_3_64/phat.txt17
-rw-r--r--benchmarks/sphere_3_64/ripser.txt103
12 files changed, 0 insertions, 627 deletions
diff --git a/benchmarks/benchmarks.txt b/benchmarks/benchmarks.txt
deleted file mode 100644
index 9fbc688..0000000
--- a/benchmarks/benchmarks.txt
+++ /dev/null
@@ -1,10 +0,0 @@
-/usr/bin/time -l ~/Source/Dionysus/examples/cohomology/rips-pairwise-cohomology -s3 -p2 ~/Bitbucket/phat-paper/benchmark/point\ cloud/sphere_3_192_points.dat
-
-/usr/bin/time -l ~/Bitbucket/phat/benchmark --primal --bit_tree_pivot_column --twist ~/Bitbucket/phat-paper/benchmark/sphere_3_192_coboundary.phat
-
-/usr/bin/time -l ~/Bitbucket/dipha/dipha --benchmark --upper_dim 3 --dual ~/Bitbucket/phat-paper/benchmark/dipha/sphere_3_192.complex /dev/null
-
-/usr/bin/time -l ~/Source/Gudhi_library_1.3.0/example/Persistent_cohomology/rips_persistence -d3 -p2 ~/Bitbucket/phat-paper/benchmark/point\ cloud/sphere_3_192_points.dat -o/dev/null
-
-c++ -std=c++11 ripser.cpp -o ripser -Ofast -D NDEBUG -D FILE_FORMAT_DIPHA -D PRINT_PERSISTENCE_PAIRS && /usr/bin/time -l ./ripser --top_dim 2 ~/Bitbucket/phat-paper/benchmark/dipha/sphere_3_192.complex
-
diff --git a/benchmarks/examples.txt b/benchmarks/examples.txt
deleted file mode 100644
index 39afeb6..0000000
--- a/benchmarks/examples.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-c++ -std=c++14 ripser.cpp -o ripser -Ofast -D NDEBUG -D STORE_DIAMETERS -D FILE_FORMAT_UPPER_TRIANGULAR_CSV -D PRINT_PERSISTENCE_PAIRS && /usr/bin/time -l ./ripser --top_dim 1 ~/Downloads/avian_all_nt_concat_jukes_cantor.csv
-
-c++ -std=c++14 ripser.cpp -o ripser -Ofast -D NDEBUG -D STORE_DIAMETERS -D FILE_FORMAT_DIPHA -D PRINT_PERSISTENCE_PAIRS && /usr/bin/time -l ./ripser --top_dim 2 ~/Bitbucket/phat-paper/benchmark/dipha/sphere_3_192.complex
-
diff --git a/benchmarks/sphere_3_192/dionysus.txt b/benchmarks/sphere_3_192/dionysus.txt
deleted file mode 100644
index 56e23d1..0000000
--- a/benchmarks/sphere_3_192/dionysus.txt
+++ /dev/null
@@ -1,28 +0,0 @@
-uli:Dionysus uli$ /usr/bin/time -l ~/Source/Dionysus/examples/cohomology/rips-pairwise-cohomology -s3 -p2 ~/Bitbucket/phat-paper/benchmark/point\ cloud/sphere_3_192_points.dat
-Boundary matrix:
-Cocycles: *.ccl
-Vertices:
-Diagram:
-Simplex vector generated, size: 56050288
-
-0% 10 20 30 40 50 60 70 80 90 100%
-|----|----|----|----|----|----|----|----|----|----|
-***************************************************
-Rips timer : Elapsed time [393.20] seconds
-Persistence timer : Elapsed time [322.41] seconds
-Total timer : Elapsed time [807.98] seconds
- 843.40 real 787.80 user 26.13 sys
-3240779776 maximum resident set size
- 0 average shared memory size
- 0 average unshared data size
- 0 average unshared stack size
- 4808144 page reclaims
- 0 page faults
- 0 swaps
- 11 block input operations
- 0 block output operations
- 0 messages sent
- 0 messages received
- 0 signals received
- 11585 voluntary context switches
- 691823 involuntary context switches
diff --git a/benchmarks/sphere_3_192/dipha.txt b/benchmarks/sphere_3_192/dipha.txt
deleted file mode 100644
index 38cc112..0000000
--- a/benchmarks/sphere_3_192/dipha.txt
+++ /dev/null
@@ -1,58 +0,0 @@
-uli:dipha uli$ /usr/bin/time -l ~/Bitbucket/dipha/dipha --benchmark --upper_dim 3 --dual ~/Bitbucket/phat-paper/benchmark/dipha/sphere_3_192.complex /dev/null
-
-Input filename:
-/Users/uli/Bitbucket/phat-paper/benchmark/dipha/sphere_3_192.complex
-
-upper_dim: 3
-
-Number of processes used:
-1
-
-Detailed information for rank 0:
- time prior mem peak mem bytes recv
- 0.0s 3 MB 4 MB 0 MB complex.load_binary( input_filename, upper_dim );
-
-Number of cells in input:
-56050288
- 20.1s 4 MB 1714 MB 0 MB get_filtration_to_cell_map( complex, dualize, filtration_to_cell_map );
- 11.5s 431 MB 2756 MB 855 MB get_cell_to_filtration_map( complex.get_num_cells(), filtration_to_cell_map, cell_to_filtration_map );
- 1.9s 1713 MB 2756 MB 0 MB generate_unreduced_columns( complex, filtration_to_cell_map, cell_to_filtration_map, cur_dim, dualize, unreduced_columns );
- 0.0s 2144 MB 2756 MB 0 MB reduction_kernel( complex.get_num_cells(), unreduced_columns, reduced_columns );
- 1.7s 2145 MB 2756 MB 53 MB generate_unreduced_columns( complex, filtration_to_cell_map, cell_to_filtration_map, cur_dim, dualize, unreduced_columns );
- 0.1s 2226 MB 2756 MB 0 MB reduction_kernel( complex.get_num_cells(), unreduced_columns, reduced_columns );
- 35.9s 2244 MB 2809 MB 3349 MB generate_unreduced_columns( complex, filtration_to_cell_map, cell_to_filtration_map, cur_dim, dualize, unreduced_columns );
- 17.1s 1359 MB 2809 MB 0 MB reduction_kernel( complex.get_num_cells(), unreduced_columns, reduced_columns );
- 14.9s 943 MB 3638 MB 106 MB dipha::outputs::save_persistence_diagram( output_filename, complex, filtration_to_cell_map, reduced_columns, dualize, upper_dim );
-
-Overall running time in seconds:
-104.5
-
-Reduction kernel running time in seconds:
-17.2
-
-Overall peak mem in GB of all ranks:
-3.6
-
-Individual peak mem in GB of per rank:
-3.6
-
-Maximal communication traffic (without sorting) in GB between any pair of nodes:
-4.3
-
-Total communication traffic (without sorting) in GB between all pairs of nodes:
-4.3
- 104.51 real 71.06 user 25.97 sys
-3815686144 maximum resident set size
- 0 average shared memory size
- 0 average unshared data size
- 0 average unshared stack size
- 8788553 page reclaims
- 0 page faults
- 0 swaps
- 0 block input operations
- 4 block output operations
- 0 messages sent
- 0 messages received
- 0 signals received
- 2337 voluntary context switches
- 238131 involuntary context switches
diff --git a/benchmarks/sphere_3_192/gudhi.txt b/benchmarks/sphere_3_192/gudhi.txt
deleted file mode 100644
index 87763c8..0000000
--- a/benchmarks/sphere_3_192/gudhi.txt
+++ /dev/null
@@ -1,18 +0,0 @@
-uli:Gudhi_library_1.3.0 uli$ /usr/bin/time -l ~/Source/Gudhi_library_1.3.0/example/Persistent_cohomology/rips_persistence -d3 -p2 ~/Bitbucket/phat-paper/benchmark/point\ cloud/sphere_3_192_points.dat -o/dev/null
-The complex contains 56050288 simplices
- and has dimension 3
- 71.98 real 120.27 user 5.86 sys
-2905890816 maximum resident set size
- 0 average shared memory size
- 0 average unshared data size
- 0 average unshared stack size
- 1535169 page reclaims
- 129 page faults
- 0 swaps
- 0 block input operations
- 0 block output operations
- 0 messages sent
- 0 messages received
- 0 signals received
- 1957 voluntary context switches
- 168798 involuntary context switches
diff --git a/benchmarks/sphere_3_192/phat.txt b/benchmarks/sphere_3_192/phat.txt
deleted file mode 100644
index 3ebcfff..0000000
--- a/benchmarks/sphere_3_192/phat.txt
+++ /dev/null
@@ -1,17 +0,0 @@
-uli:phat uli$ /usr/bin/time -l ~/Bitbucket/phat/benchmark --primal --bit_tree_pivot_column --twist ~/Bitbucket/phat-paper/benchmark/sphere_3_192_coboundary.phat
-/Users/uli/Bitbucket/phat-paper/benchmark/sphere_3_192_coboundary.phat, bit_tree_pivot_column, twist, primal, Reduction time: 2.649s
- 16.91 real 12.22 user 4.38 sys
-3742277632 maximum resident set size
- 0 average shared memory size
- 0 average unshared data size
- 0 average unshared stack size
- 1568913 page reclaims
- 8 page faults
- 0 swaps
- 10 block input operations
- 0 block output operations
- 0 messages sent
- 0 messages received
- 0 signals received
- 20 voluntary context switches
- 13471 involuntary context switches
diff --git a/benchmarks/sphere_3_192/ripser.txt b/benchmarks/sphere_3_192/ripser.txt
deleted file mode 100644
index 60b7939..0000000
--- a/benchmarks/sphere_3_192/ripser.txt
+++ /dev/null
@@ -1,268 +0,0 @@
-uli:ripser uli$ c++ -std=c++11 ripser.cpp -o ripser -Ofast -D NDEBUG -D FILE_FORMAT_DIPHA -D PRINT_PERSISTENCE_PAIRS && /usr/bin/time -l ./ripser --top_dim 2 ~/Bitbucket/phat-paper/benchmark/dipha/sphere_3_192.complex
-distance matrix with 192 points
-distance matrix transformed to lower triangular form
-value range: [0.00367531,2]
-persistence intervals in dim 0:
- [0,0.145018)
- [0,0.0831521)
- [0,0.115939)
- [0,0.202564)
- [0,0.0217315)
- [0,0.127383)
- [0,0.0387451)
- [0,0.0623736)
- [0,0.282169)
- [0,0.126595)
- [0,0.195722)
- [0,0.0792212)
- [0,0.149226)
- [0,0.2286)
- [0,0.197377)
- [0,0.0651112)
- [0,0.138674)
- [0,0.147427)
- [0,0.124774)
- [0,0.293466)
- [0,0.17493)
- [0,0.131438)
- [0,0.151643)
- [0,0.208063)
- [0,0.129741)
- [0,0.127864)
- [0,0.131638)
- [0,0.0959033)
- [0,0.150747)
- [0,0.119187)
- [0,0.0870489)
- [0,0.165592)
- [0,0.121955)
- [0,0.1569)
- [0,0.0433426)
- [0,0.280629)
- [0,0.0487061)
- [0,0.0746054)
- [0,0.0728647)
- [0,0.0471186)
- [0,0.0988752)
- [0,0.111131)
- [0,0.141823)
- [0,0.249345)
- [0,0.283881)
- [0,0.0522132)
- [0,0.157293)
- [0,0.0496187)
- [0,0.143151)
- [0,0.135402)
- [0,0.192733)
- [0,0.057488)
- [0,0.0311057)
- [0,0.159282)
- [0,0.109526)
- [0,0.234112)
- [0,0.084341)
- [0,0.0593071)
- [0,0.133033)
- [0,0.240632)
- [0,0.248879)
- [0,0.134886)
- [0,0.228917)
- [0,0.249339)
- [0,0.204544)
- [0,0.048826)
- [0,0.143085)
- [0,0.231675)
- [0,0.191661)
- [0,0.0637053)
- [0,0.0560443)
- [0,0.142537)
- [0,0.00367531)
- [0,0.257997)
- [0,0.037954)
- [0,0.204208)
- [0,0.201961)
- [0,0.215759)
- [0,0.162464)
- [0,0.0692368)
- [0,0.145725)
- [0,0.205389)
- [0,0.203812)
- [0,0.15587)
- [0,0.123527)
- [0,0.108768)
- [0,0.165314)
- [0,0.0782455)
- [0,0.0173134)
- [0,0.176306)
- [0,0.0741239)
- [0,0.0831358)
- [0,0.266592)
- [0,0.0515157)
- [0,0.223232)
- [0,0.0120098)
- [0,0.122089)
- [0,0.147203)
- [0,0.283562)
- [0,0.304062)
- [0,0.253227)
- [0,0.164809)
- [0,0.149017)
- [0,0.133525)
- [0,0.237571)
- [0,0.0743236)
- [0,0.0672609)
- [0,0.218526)
- [0,0.0559886)
- [0,0.165907)
- [0,0.0800348)
- [0,0.192356)
- [0,0.164815)
- [0,0.142834)
- [0,0.174172)
- [0,0.0714516)
- [0,0.227933)
- [0,0.0702075)
- [0,0.18428)
- [0,0.0970981)
- [0,0.133722)
- [0,0.0753955)
- [0,0.0884133)
- [0,0.15244)
- [0,0.157373)
- [0,0.234969)
- [0,0.173412)
- [0,0.193791)
- [0,0.147289)
- [0,0.111798)
- [0,0.277191)
- [0,0.167455)
- [0,0.189106)
- [0,0.179609)
- [0,0.297053)
- [0,0.158413)
- [0,0.165494)
- [0,0.199673)
- [0,0.227524)
- [0,0.076909)
- [0,0.332695)
- [0,0.0802451)
- [0,0.0994522)
- [0,0.154095)
- [0,0.274611)
- [0,0.24348)
- [0,0.207016)
- [0,0.218561)
- [0,0.270996)
- [0,0.214018)
- [0,0.323964)
- [0,0.184757)
- [0,0.193804)
- [0,0.276431)
- [0,0.175016)
- [0,0.142152)
- [0,0.0857401)
- [0,0.207714)
- [0,0.00391946)
- [0,0.168587)
- [0,0.192406)
- [0,0.246491)
- [0,0.148506)
- [0,0.25725)
- [0,0.165202)
- [0,0.0814685)
- [0,0.247042)
- [0,0.0633425)
- [0,0.253163)
- [0,0.157251)
- [0,0.285416)
- [0,0.173586)
- [0,0.210372)
- [0,0.266635)
- [0,0.316023)
- [0,0.287316)
- [0,0.264334)
- [0,0.208851)
- [0,0.277582)
- [0,0.288591)
- [0,0.231179)
- [0,0.190642)
- [0,0.24509)
- [0,0.319493)
- [0,0.207261)
- [0,0.173684)
- [0,0.264483)
- [0,0.289189)
- [0,0.23879)
- [0,0.297933)
- [0,0.268806)
- [0, )
-persistence intervals in dim 1:
- [0.542696,0.558863)
- [0.531636,0.578093)
- [0.530723,0.576869)
- [0.463389,0.505345)
- [0.445398,0.448892)
- [0.443911,0.54761)
- [0.431628,0.477277)
- [0.413789,0.487379)
- [0.412572,0.46308)
- [0.411549,0.471715)
- [0.409968,0.478461)
- [0.386278,0.4922)
- [0.381084,0.421374)
- [0.377729,0.514046)
- [0.377147,0.414788)
- [0.377019,0.434385)
- [0.374531,0.477153)
- [0.370051,0.483155)
- [0.361715,0.403181)
- [0.354747,0.454956)
- [0.352356,0.541947)
- [0.350913,0.369543)
- [0.35058,0.580726)
- [0.347806,0.638039)
- [0.347388,0.559978)
- [0.344005,0.387193)
- [0.34298,0.65758)
- [0.339394,0.463666)
- [0.33836,0.350411)
- [0.33392,0.35111)
- [0.33364,0.3797)
- [0.331259,0.356381)
- [0.329066,0.386148)
- [0.324571,0.343083)
- [0.324159,0.399094)
- [0.322683,0.482958)
- [0.318032,0.417462)
- [0.317521,0.349622)
- [0.316534,0.682559)
- [0.309419,0.37151)
- [0.309336,0.310216)
- [0.308779,0.346297)
- [0.304761,0.647803)
- [0.301986,0.478334)
- [0.301045,0.303943)
- [0.29997,0.311993)
- [0.298341,0.360737)
- [0.279016,0.301331)
- [0.2576,0.373749)
- [0.253337,0.292286)
- [0.24546,0.248903)
- [0.240869,0.288747)
- [0.189652,0.197515)
-persistence intervals in dim 2:
- [0.720484,1.65562)
- 2.22 real 2.09 user 0.11 sys
- 182439936 maximum resident set size
- 0 average shared memory size
- 0 average unshared data size
- 0 average unshared stack size
- 44546 page reclaims
- 9 page faults
- 0 swaps
- 0 block input operations
- 0 block output operations
- 0 messages sent
- 0 messages received
- 0 signals received
- 1 voluntary context switches
- 1307 involuntary context switches
diff --git a/benchmarks/sphere_3_64/dionysus.txt b/benchmarks/sphere_3_64/dionysus.txt
deleted file mode 100644
index 52b879d..0000000
--- a/benchmarks/sphere_3_64/dionysus.txt
+++ /dev/null
@@ -1,28 +0,0 @@
-uli:Dionysus uli$ /usr/bin/time -l ~/Source/Dionysus/examples/cohomology/rips-pairwise-cohomology -s3 -p2 ~/Bitbucket/phat-paper/benchmark/point\ cloud/sphere_3_64_points.dat
-Boundary matrix:
-Cocycles: *.ccl
-Vertices:
-Diagram:
-Simplex vector generated, size: 679120
-
-0% 10 20 30 40 50 60 70 80 90 100%
-|----|----|----|----|----|----|----|----|----|----|
-***************************************************
-Rips timer : Elapsed time [3.01] seconds
-Persistence timer : Elapsed time [1.98] seconds
-Total timer : Elapsed time [5.85] seconds
- 5.94 real 5.85 user 0.05 sys
- 76812288 maximum resident set size
- 0 average shared memory size
- 0 average unshared data size
- 0 average unshared stack size
- 18766 page reclaims
- 0 page faults
- 0 swaps
- 0 block input operations
- 0 block output operations
- 0 messages sent
- 0 messages received
- 0 signals received
- 0 voluntary context switches
- 2160 involuntary context switches
diff --git a/benchmarks/sphere_3_64/dipha.txt b/benchmarks/sphere_3_64/dipha.txt
deleted file mode 100644
index 67534d6..0000000
--- a/benchmarks/sphere_3_64/dipha.txt
+++ /dev/null
@@ -1,58 +0,0 @@
-uli:dipha uli$ /usr/bin/time -l ~/Bitbucket/dipha/dipha --benchmark --upper_dim 3 --dual ~/Bitbucket/phat-paper/benchmark/dipha/sphere_3_64.complex /dev/null
-
-Input filename:
-/Users/uli/Bitbucket/phat-paper/benchmark/dipha/sphere_3_64.complex
-
-upper_dim: 3
-
-Number of processes used:
-1
-
-Detailed information for rank 0:
- time prior mem peak mem bytes recv
- 0.0s 3 MB 3 MB 0 MB complex.load_binary( input_filename, upper_dim );
-
-Number of cells in input:
-679120
- 0.2s 3 MB 24 MB 0 MB get_filtration_to_cell_map( complex, dualize, filtration_to_cell_map );
- 0.1s 24 MB 69 MB 10 MB get_cell_to_filtration_map( complex.get_num_cells(), filtration_to_cell_map, cell_to_filtration_map );
- 0.0s 84 MB 85 MB 0 MB generate_unreduced_columns( complex, filtration_to_cell_map, cell_to_filtration_map, cur_dim, dualize, unreduced_columns );
- 0.0s 85 MB 85 MB 0 MB reduction_kernel( complex.get_num_cells(), unreduced_columns, reduced_columns );
- 0.0s 85 MB 88 MB 1 MB generate_unreduced_columns( complex, filtration_to_cell_map, cell_to_filtration_map, cur_dim, dualize, unreduced_columns );
- 0.0s 88 MB 89 MB 0 MB reduction_kernel( complex.get_num_cells(), unreduced_columns, reduced_columns );
- 0.3s 89 MB 122 MB 38 MB generate_unreduced_columns( complex, filtration_to_cell_map, cell_to_filtration_map, cur_dim, dualize, unreduced_columns );
- 0.1s 102 MB 142 MB 0 MB reduction_kernel( complex.get_num_cells(), unreduced_columns, reduced_columns );
- 0.1s 141 MB 142 MB 3 MB dipha::outputs::save_persistence_diagram( output_filename, complex, filtration_to_cell_map, reduced_columns, dualize, upper_dim );
-
-Overall running time in seconds:
-0.8
-
-Reduction kernel running time in seconds:
-0.1
-
-Overall peak mem in GB of all ranks:
-0.1
-
-Individual peak mem in GB of per rank:
-0.1
-
-Maximal communication traffic (without sorting) in GB between any pair of nodes:
-0.1
-
-Total communication traffic (without sorting) in GB between all pairs of nodes:
-0.1
- 0.81 real 0.65 user 0.13 sys
- 149577728 maximum resident set size
- 0 average shared memory size
- 0 average unshared data size
- 0 average unshared stack size
- 51467 page reclaims
- 0 page faults
- 0 swaps
- 0 block input operations
- 1 block output operations
- 0 messages sent
- 0 messages received
- 0 signals received
- 7 voluntary context switches
- 1069 involuntary context switches
diff --git a/benchmarks/sphere_3_64/gudhi.txt b/benchmarks/sphere_3_64/gudhi.txt
deleted file mode 100644
index ee69c4a..0000000
--- a/benchmarks/sphere_3_64/gudhi.txt
+++ /dev/null
@@ -1,18 +0,0 @@
-uli:Gudhi_library_1.3.0 uli$ /usr/bin/time -l ~/Source/Gudhi_library_1.3.0/example/Persistent_cohomology/rips_persistence -d3 -p2 ~/Bitbucket/phat-paper/benchmark/point\ cloud/sphere_3_64_points.dat -o/dev/null
-The complex contains 679120 simplices
- and has dimension 3
- 0.45 real 0.75 user 0.02 sys
- 37740544 maximum resident set size
- 0 average shared memory size
- 0 average unshared data size
- 0 average unshared stack size
- 9124 page reclaims
- 122 page faults
- 0 swaps
- 1 block input operations
- 0 block output operations
- 0 messages sent
- 0 messages received
- 0 signals received
- 14 voluntary context switches
- 2324 involuntary context switches
diff --git a/benchmarks/sphere_3_64/phat.txt b/benchmarks/sphere_3_64/phat.txt
deleted file mode 100644
index 0dff324..0000000
--- a/benchmarks/sphere_3_64/phat.txt
+++ /dev/null
@@ -1,17 +0,0 @@
-uli:phat uli$ /usr/bin/time -l ~/Bitbucket/phat/benchmark --primal --bit_tree_pivot_column --twist ~/Bitbucket/phat-paper/benchmark/sphere_3_64_coboundary.phat
-/Users/uli/Bitbucket/phat-paper/benchmark/sphere_3_64_coboundary.phat, bit_tree_pivot_column, twist, primal, Reduction time: 0.019s
- 0.22 real 0.15 user 0.04 sys
- 47742976 maximum resident set size
- 0 average shared memory size
- 0 average unshared data size
- 0 average unshared stack size
- 11669 page reclaims
- 2 page faults
- 0 swaps
- 2 block input operations
- 0 block output operations
- 0 messages sent
- 0 messages received
- 0 signals received
- 4 voluntary context switches
- 106 involuntary context switches
diff --git a/benchmarks/sphere_3_64/ripser.txt b/benchmarks/sphere_3_64/ripser.txt
deleted file mode 100644
index 016143d..0000000
--- a/benchmarks/sphere_3_64/ripser.txt
+++ /dev/null
@@ -1,103 +0,0 @@
-uli:ripser uli$ c++ -std=c++11 ripser.cpp -o ripser -Ofast -D NDEBUG -D FILE_FORMAT_DIPHA -D PRINT_PERSISTENCE_PAIRS && /usr/bin/time -l ./ripser --top_dim 2 ~/Bitbucket/phat-paper/benchmark/dipha/sphere_3_64.complex
-distance matrix with 64 points
-distance matrix transformed to lower triangular form
-value range: [0.00391946,1.99927]
-persistence intervals in dim 0:
- [0,0.147289)
- [0,0.111798)
- [0,0.279354)
- [0,0.379849)
- [0,0.217485)
- [0,0.179609)
- [0,0.297053)
- [0,0.227524)
- [0,0.334523)
- [0,0.205129)
- [0,0.266643)
- [0,0.076909)
- [0,0.424333)
- [0,0.0802451)
- [0,0.141103)
- [0,0.154095)
- [0,0.280747)
- [0,0.561426)
- [0,0.255364)
- [0,0.218561)
- [0,0.344005)
- [0,0.457212)
- [0,0.339394)
- [0,0.184757)
- [0,0.193804)
- [0,0.276431)
- [0,0.276383)
- [0,0.273482)
- [0,0.162738)
- [0,0.208851)
- [0,0.00391946)
- [0,0.168587)
- [0,0.231288)
- [0,0.370337)
- [0,0.151879)
- [0,0.336643)
- [0,0.176636)
- [0,0.0814685)
- [0,0.287316)
- [0,0.0633425)
- [0,0.46675)
- [0,0.169115)
- [0,0.387245)
- [0,0.354112)
- [0,0.236525)
- [0,0.377019)
- [0,0.396994)
- [0,0.58991)
- [0,0.374531)
- [0,0.374138)
- [0,0.439977)
- [0,0.487279)
- [0,0.231179)
- [0,0.200333)
- [0,0.401576)
- [0,0.574945)
- [0,0.252863)
- [0,0.173684)
- [0,0.284319)
- [0,0.355419)
- [0,0.23879)
- [0,0.381084)
- [0,0.532104)
- [0, )
-persistence intervals in dim 1:
- [0.84172,1.04196)
- [0.763446,0.863406)
- [0.727244,0.74155)
- [0.708398,0.757279)
- [0.655113,0.849319)
- [0.62495,0.753672)
- [0.60904,0.682559)
- [0.607973,0.672219)
- [0.606907,0.829538)
- [0.588045,1.04527)
- [0.57698,0.769491)
- [0.559498,0.586113)
- [0.525224,0.645181)
- [0.445398,0.448892)
- [0.412572,0.478334)
- [0.376457,0.63549)
-persistence intervals in dim 2:
- [1.10328,1.67029)
- 0.05 real 0.05 user 0.00 sys
- 4300800 maximum resident set size
- 0 average shared memory size
- 0 average unshared data size
- 0 average unshared stack size
- 1054 page reclaims
- 9 page faults
- 0 swaps
- 0 block input operations
- 0 block output operations
- 0 messages sent
- 0 messages received
- 0 signals received
- 1 voluntary context switches
- 10 involuntary context switches