diff options
Diffstat (limited to 'benchmarks/Dockerfile')
| -rw-r--r-- | benchmarks/Dockerfile | 16 |
1 files changed, 11 insertions, 5 deletions
diff --git a/benchmarks/Dockerfile b/benchmarks/Dockerfile index 40c654f..3d6e952 100644 --- a/benchmarks/Dockerfile +++ b/benchmarks/Dockerfile @@ -52,7 +52,7 @@ RUN curl -LO https://raw.githubusercontent.com/Ripser/ripser/dev/benchmarks/sphe && curl -LO https://github.com/n-otter/PH-roadmap/raw/master/data_sets/roadmap_datasets_point_cloud/random_point_cloud_50_16_.txt \ && curl -LO https://github.com/n-otter/PH-roadmap/raw/master/data_sets/roadmap_datasets_distmat/dipha/random_50_16.bin - +COPY o3_1024.txt . FROM benchmark-setup as benchmark-ripser @@ -65,10 +65,11 @@ ENV PATH="${PATH}:/ripser/ripser" WORKDIR /benchmark RUN time -v -o sphere_3_192.ripser.txt ripser sphere_3_192.distance_matrix --dim 2 -RUN time -v -o random.ripser.txt ripser random_point_cloud_50_16_.txt --dim 7 +RUN time -v -o random.ripser.txt ripser random_point_cloud_50_16_.txt --format point-cloud --dim 7 RUN time -v -o fractal-r.ripser.txt ripser fractal_9_5_2_random_edge_list.txt_0.19795_distmat.txt --dim 2 -RUN time -v -o dragon-2.ripser.txt ripser dragon_vrip.ply.txt_2000_.txt --dim 1 +RUN time -v -o dragon-2.ripser.txt ripser dragon_vrip.ply.txt_2000_.txt --format point-cloud --dim 1 # RUN time -v -o genome.ripser.txt ripser human_gene_distmat.txt --dim 1 +RUN time -v -o o3_1024.ripser.txt ripser o3_1024.txt --format point-cloud --dim 3 --threshold 1.8 --ratio 2 @@ -175,8 +176,13 @@ RUN time -v -o fractal-r.eirene.txt \ julia --eval 'using Eirene; using DelimitedFiles; eirene([0 1; 1 0]); println(@elapsed eirene(transpose(readdlm("fractal_9_5_2_random_edge_list.txt_0.19795_distmat.txt")), record="none", maxdim=2))' >fractal-r.eirene.out.txt #RUN time -v -o random.eirene.txt \ # julia --eval 'using Eirene; using DelimitedFiles; eirene([0 1; 1 0]); println(@elapsed eirene(transpose(readdlm("random_point_cloud_50_16_.txt")), model="pc", record="none", maxdim=7))' >random.eirene.out.txt - - +RUN time -v -o o3_1024.eirene.txt \ + julia --eval 'using Eirene; using DelimitedFiles; eirene([0 1; 1 0]); println(@elapsed eirene(transpose(readdlm("o3_1024.txt")), model="pc", record="none", maxdim=3, maxrad=1.8))' > o3_1024.eirene.out.txt +# +# using Eirene; using DelimitedFiles; eirene([0 1; 1 0]); println(@elapsed result=eirene(transpose(readdlm("/Users/uli/Bitbucket/ripser/examples/o3_1024.txt")), model="pc", record="none", maxdim=3, maxrad=1.8)) +# using Eirene; using DelimitedFiles; eirene([0 1; 1 0]); println(@elapsed result=eirene(transpose(readdlm("/Users/uli/Bitbucket/ripser/examples/o3_2048.txt")), model="pc", record="none", maxdim=3, maxrad=1.6)) +# using Eirene; using DelimitedFiles; eirene([0 1; 1 0]); println(@elapsed result=eirene(transpose(readdlm("/Users/uli/Bitbucket/ripser/examples/o3_4096.txt")), model="pc", record="none", maxdim=3, maxrad=1.4)) +# FROM benchmark-setup as benchmark-dionysus2 |