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uli:dipha uli$ /usr/bin/time -l ~/Bitbucket/dipha/dipha --benchmark --upper_dim 3 --dual ~/Bitbucket/phat-paper/benchmark/dipha/sphere_3_192.complex /dev/null
Input filename:
/Users/uli/Bitbucket/phat-paper/benchmark/dipha/sphere_3_192.complex
upper_dim: 3
Number of processes used:
1
Detailed information for rank 0:
time prior mem peak mem bytes recv
0.0s 3 MB 4 MB 0 MB complex.load_binary( input_filename, upper_dim );
Number of cells in input:
56050288
20.1s 4 MB 1714 MB 0 MB get_filtration_to_cell_map( complex, dualize, filtration_to_cell_map );
11.5s 431 MB 2756 MB 855 MB get_cell_to_filtration_map( complex.get_num_cells(), filtration_to_cell_map, cell_to_filtration_map );
1.9s 1713 MB 2756 MB 0 MB generate_unreduced_columns( complex, filtration_to_cell_map, cell_to_filtration_map, cur_dim, dualize, unreduced_columns );
0.0s 2144 MB 2756 MB 0 MB reduction_kernel( complex.get_num_cells(), unreduced_columns, reduced_columns );
1.7s 2145 MB 2756 MB 53 MB generate_unreduced_columns( complex, filtration_to_cell_map, cell_to_filtration_map, cur_dim, dualize, unreduced_columns );
0.1s 2226 MB 2756 MB 0 MB reduction_kernel( complex.get_num_cells(), unreduced_columns, reduced_columns );
35.9s 2244 MB 2809 MB 3349 MB generate_unreduced_columns( complex, filtration_to_cell_map, cell_to_filtration_map, cur_dim, dualize, unreduced_columns );
17.1s 1359 MB 2809 MB 0 MB reduction_kernel( complex.get_num_cells(), unreduced_columns, reduced_columns );
14.9s 943 MB 3638 MB 106 MB dipha::outputs::save_persistence_diagram( output_filename, complex, filtration_to_cell_map, reduced_columns, dualize, upper_dim );
Overall running time in seconds:
104.5
Reduction kernel running time in seconds:
17.2
Overall peak mem in GB of all ranks:
3.6
Individual peak mem in GB of per rank:
3.6
Maximal communication traffic (without sorting) in GB between any pair of nodes:
4.3
Total communication traffic (without sorting) in GB between all pairs of nodes:
4.3
104.51 real 71.06 user 25.97 sys
3815686144 maximum resident set size
0 average shared memory size
0 average unshared data size
0 average unshared stack size
8788553 page reclaims
0 page faults
0 swaps
0 block input operations
4 block output operations
0 messages sent
0 messages received
0 signals received
2337 voluntary context switches
238131 involuntary context switches
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