removed unnecessary files

5 files changed, 0 insertions, 224 deletions

diff --git a/benchmarks/sphere_3_64/dionysus.txt b/benchmarks/sphere_3_64/dionysus.txt
deleted file mode 100644
index 52b879d..0000000
--- a/benchmarks/sphere_3_64/dionysus.txt
+++ /dev/null
@@ -1,28 +0,0 @@
-uli:Dionysus uli$ /usr/bin/time -l ~/Source/Dionysus/examples/cohomology/rips-pairwise-cohomology -s3 -p2 ~/Bitbucket/phat-paper/benchmark/point\ cloud/sphere_3_64_points.dat 
-Boundary matrix: 
-Cocycles:        *.ccl
-Vertices:        
-Diagram:         
-Simplex vector generated, size: 679120
-
-0%   10   20   30   40   50   60   70   80   90   100%
-|----|----|----|----|----|----|----|----|----|----|
-***************************************************
-Rips timer : Elapsed time [3.01] seconds
-Persistence timer : Elapsed time [1.98] seconds
-Total timer : Elapsed time [5.85] seconds
-        5.94 real         5.85 user         0.05 sys
-  76812288  maximum resident set size
-         0  average shared memory size
-         0  average unshared data size
-         0  average unshared stack size
-     18766  page reclaims
-         0  page faults
-         0  swaps
-         0  block input operations
-         0  block output operations
-         0  messages sent
-         0  messages received
-         0  signals received
-         0  voluntary context switches
-      2160  involuntary context switches
diff --git a/benchmarks/sphere_3_64/dipha.txt b/benchmarks/sphere_3_64/dipha.txt
deleted file mode 100644
index 67534d6..0000000
--- a/benchmarks/sphere_3_64/dipha.txt
+++ /dev/null
@@ -1,58 +0,0 @@
-uli:dipha uli$ /usr/bin/time -l ~/Bitbucket/dipha/dipha --benchmark --upper_dim 3 --dual ~/Bitbucket/phat-paper/benchmark/dipha/sphere_3_64.complex /dev/null
-
-Input filename: 
-/Users/uli/Bitbucket/phat-paper/benchmark/dipha/sphere_3_64.complex
-
-upper_dim: 3
-
-Number of processes used: 
-1
-
-Detailed information for rank 0:
-       time    prior mem     peak mem   bytes recv
-       0.0s         3 MB         3 MB         0 MB   complex.load_binary( input_filename, upper_dim );
-
-Number of cells in input: 
-679120
-       0.2s         3 MB        24 MB         0 MB   get_filtration_to_cell_map( complex, dualize, filtration_to_cell_map );
-       0.1s        24 MB        69 MB        10 MB   get_cell_to_filtration_map( complex.get_num_cells(), filtration_to_cell_map, cell_to_filtration_map );
-       0.0s        84 MB        85 MB         0 MB   generate_unreduced_columns( complex, filtration_to_cell_map, cell_to_filtration_map, cur_dim, dualize, unreduced_columns );
-       0.0s        85 MB        85 MB         0 MB   reduction_kernel( complex.get_num_cells(), unreduced_columns, reduced_columns );
-       0.0s        85 MB        88 MB         1 MB   generate_unreduced_columns( complex, filtration_to_cell_map, cell_to_filtration_map, cur_dim, dualize, unreduced_columns );
-       0.0s        88 MB        89 MB         0 MB   reduction_kernel( complex.get_num_cells(), unreduced_columns, reduced_columns );
-       0.3s        89 MB       122 MB        38 MB   generate_unreduced_columns( complex, filtration_to_cell_map, cell_to_filtration_map, cur_dim, dualize, unreduced_columns );
-       0.1s       102 MB       142 MB         0 MB   reduction_kernel( complex.get_num_cells(), unreduced_columns, reduced_columns );
-       0.1s       141 MB       142 MB         3 MB   dipha::outputs::save_persistence_diagram( output_filename, complex, filtration_to_cell_map, reduced_columns, dualize, upper_dim );
-
-Overall running time in seconds: 
-0.8
-
-Reduction kernel running time in seconds: 
-0.1
-
-Overall peak mem in GB of all ranks: 
-0.1
-
-Individual peak mem in GB of per rank: 
-0.1
-
-Maximal communication traffic (without sorting) in GB between any pair of nodes:
-0.1
-
-Total communication traffic (without sorting) in GB between all pairs of nodes:
-0.1
-        0.81 real         0.65 user         0.13 sys
- 149577728  maximum resident set size
-         0  average shared memory size
-         0  average unshared data size
-         0  average unshared stack size
-     51467  page reclaims
-         0  page faults
-         0  swaps
-         0  block input operations
-         1  block output operations
-         0  messages sent
-         0  messages received
-         0  signals received
-         7  voluntary context switches
-      1069  involuntary context switches
diff --git a/benchmarks/sphere_3_64/gudhi.txt b/benchmarks/sphere_3_64/gudhi.txt
deleted file mode 100644
index ee69c4a..0000000
--- a/benchmarks/sphere_3_64/gudhi.txt
+++ /dev/null
@@ -1,18 +0,0 @@
-uli:Gudhi_library_1.3.0 uli$ /usr/bin/time -l ~/Source/Gudhi_library_1.3.0/example/Persistent_cohomology/rips_persistence -d3 -p2 ~/Bitbucket/phat-paper/benchmark/point\ cloud/sphere_3_64_points.dat -o/dev/null
-The complex contains 679120 simplices 
-   and has dimension 3 
-        0.45 real         0.75 user         0.02 sys
-  37740544  maximum resident set size
-         0  average shared memory size
-         0  average unshared data size
-         0  average unshared stack size
-      9124  page reclaims
-       122  page faults
-         0  swaps
-         1  block input operations
-         0  block output operations
-         0  messages sent
-         0  messages received
-         0  signals received
-        14  voluntary context switches
-      2324  involuntary context switches
diff --git a/benchmarks/sphere_3_64/phat.txt b/benchmarks/sphere_3_64/phat.txt
deleted file mode 100644
index 0dff324..0000000
--- a/benchmarks/sphere_3_64/phat.txt
+++ /dev/null
@@ -1,17 +0,0 @@
-uli:phat uli$ /usr/bin/time -l ~/Bitbucket/phat/benchmark --primal --bit_tree_pivot_column --twist ~/Bitbucket/phat-paper/benchmark/sphere_3_64_coboundary.phat
-/Users/uli/Bitbucket/phat-paper/benchmark/sphere_3_64_coboundary.phat, bit_tree_pivot_column, twist, primal, Reduction time: 0.019s
-        0.22 real         0.15 user         0.04 sys
-  47742976  maximum resident set size
-         0  average shared memory size
-         0  average unshared data size
-         0  average unshared stack size
-     11669  page reclaims
-         2  page faults
-         0  swaps
-         2  block input operations
-         0  block output operations
-         0  messages sent
-         0  messages received
-         0  signals received
-         4  voluntary context switches
-       106  involuntary context switches
diff --git a/benchmarks/sphere_3_64/ripser.txt b/benchmarks/sphere_3_64/ripser.txt
deleted file mode 100644
index 016143d..0000000
--- a/benchmarks/sphere_3_64/ripser.txt
+++ /dev/null
@@ -1,103 +0,0 @@
-uli:ripser uli$ c++ -std=c++11 ripser.cpp -o ripser -Ofast -D NDEBUG -D FILE_FORMAT_DIPHA -D PRINT_PERSISTENCE_PAIRS && /usr/bin/time -l ./ripser --top_dim 2 ~/Bitbucket/phat-paper/benchmark/dipha/sphere_3_64.complex
-distance matrix with 64 points
-distance matrix transformed to lower triangular form
-value range: [0.00391946,1.99927]
-persistence intervals in dim 0:
- [0,0.147289)
- [0,0.111798)
- [0,0.279354)
- [0,0.379849)
- [0,0.217485)
- [0,0.179609)
- [0,0.297053)
- [0,0.227524)
- [0,0.334523)
- [0,0.205129)
- [0,0.266643)
- [0,0.076909)
- [0,0.424333)
- [0,0.0802451)
- [0,0.141103)
- [0,0.154095)
- [0,0.280747)
- [0,0.561426)
- [0,0.255364)
- [0,0.218561)
- [0,0.344005)
- [0,0.457212)
- [0,0.339394)
- [0,0.184757)
- [0,0.193804)
- [0,0.276431)
- [0,0.276383)
- [0,0.273482)
- [0,0.162738)
- [0,0.208851)
- [0,0.00391946)
- [0,0.168587)
- [0,0.231288)
- [0,0.370337)
- [0,0.151879)
- [0,0.336643)
- [0,0.176636)
- [0,0.0814685)
- [0,0.287316)
- [0,0.0633425)
- [0,0.46675)
- [0,0.169115)
- [0,0.387245)
- [0,0.354112)
- [0,0.236525)
- [0,0.377019)
- [0,0.396994)
- [0,0.58991)
- [0,0.374531)
- [0,0.374138)
- [0,0.439977)
- [0,0.487279)
- [0,0.231179)
- [0,0.200333)
- [0,0.401576)
- [0,0.574945)
- [0,0.252863)
- [0,0.173684)
- [0,0.284319)
- [0,0.355419)
- [0,0.23879)
- [0,0.381084)
- [0,0.532104)
- [0, )
-persistence intervals in dim 1:
- [0.84172,1.04196)
- [0.763446,0.863406)
- [0.727244,0.74155)
- [0.708398,0.757279)
- [0.655113,0.849319)
- [0.62495,0.753672)
- [0.60904,0.682559)
- [0.607973,0.672219)
- [0.606907,0.829538)
- [0.588045,1.04527)
- [0.57698,0.769491)
- [0.559498,0.586113)
- [0.525224,0.645181)
- [0.445398,0.448892)
- [0.412572,0.478334)
- [0.376457,0.63549)
-persistence intervals in dim 2:
- [1.10328,1.67029)
-        0.05 real         0.05 user         0.00 sys
-   4300800  maximum resident set size
-         0  average shared memory size
-         0  average unshared data size
-         0  average unshared stack size
-      1054  page reclaims
-         9  page faults
-         0  swaps
-         0  block input operations
-         0  block output operations
-         0  messages sent
-         0  messages received
-         0  signals received
-         1  voluntary context switches
-        10  involuntary context switches