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-rw-r--r--benchmarks/sphere_3_64/dionysus.txt28
-rw-r--r--benchmarks/sphere_3_64/dipha.txt58
-rw-r--r--benchmarks/sphere_3_64/gudhi.txt18
-rw-r--r--benchmarks/sphere_3_64/phat.txt17
-rw-r--r--benchmarks/sphere_3_64/ripser.txt103
-rw-r--r--benchmarks/sphere_3_64/sphere_3_64_points.dat64
6 files changed, 0 insertions, 288 deletions
diff --git a/benchmarks/sphere_3_64/dionysus.txt b/benchmarks/sphere_3_64/dionysus.txt
deleted file mode 100644
index 52b879d..0000000
--- a/benchmarks/sphere_3_64/dionysus.txt
+++ /dev/null
@@ -1,28 +0,0 @@
-uli:Dionysus uli$ /usr/bin/time -l ~/Source/Dionysus/examples/cohomology/rips-pairwise-cohomology -s3 -p2 ~/Bitbucket/phat-paper/benchmark/point\ cloud/sphere_3_64_points.dat
-Boundary matrix:
-Cocycles: *.ccl
-Vertices:
-Diagram:
-Simplex vector generated, size: 679120
-
-0% 10 20 30 40 50 60 70 80 90 100%
-|----|----|----|----|----|----|----|----|----|----|
-***************************************************
-Rips timer : Elapsed time [3.01] seconds
-Persistence timer : Elapsed time [1.98] seconds
-Total timer : Elapsed time [5.85] seconds
- 5.94 real 5.85 user 0.05 sys
- 76812288 maximum resident set size
- 0 average shared memory size
- 0 average unshared data size
- 0 average unshared stack size
- 18766 page reclaims
- 0 page faults
- 0 swaps
- 0 block input operations
- 0 block output operations
- 0 messages sent
- 0 messages received
- 0 signals received
- 0 voluntary context switches
- 2160 involuntary context switches
diff --git a/benchmarks/sphere_3_64/dipha.txt b/benchmarks/sphere_3_64/dipha.txt
deleted file mode 100644
index 67534d6..0000000
--- a/benchmarks/sphere_3_64/dipha.txt
+++ /dev/null
@@ -1,58 +0,0 @@
-uli:dipha uli$ /usr/bin/time -l ~/Bitbucket/dipha/dipha --benchmark --upper_dim 3 --dual ~/Bitbucket/phat-paper/benchmark/dipha/sphere_3_64.complex /dev/null
-
-Input filename:
-/Users/uli/Bitbucket/phat-paper/benchmark/dipha/sphere_3_64.complex
-
-upper_dim: 3
-
-Number of processes used:
-1
-
-Detailed information for rank 0:
- time prior mem peak mem bytes recv
- 0.0s 3 MB 3 MB 0 MB complex.load_binary( input_filename, upper_dim );
-
-Number of cells in input:
-679120
- 0.2s 3 MB 24 MB 0 MB get_filtration_to_cell_map( complex, dualize, filtration_to_cell_map );
- 0.1s 24 MB 69 MB 10 MB get_cell_to_filtration_map( complex.get_num_cells(), filtration_to_cell_map, cell_to_filtration_map );
- 0.0s 84 MB 85 MB 0 MB generate_unreduced_columns( complex, filtration_to_cell_map, cell_to_filtration_map, cur_dim, dualize, unreduced_columns );
- 0.0s 85 MB 85 MB 0 MB reduction_kernel( complex.get_num_cells(), unreduced_columns, reduced_columns );
- 0.0s 85 MB 88 MB 1 MB generate_unreduced_columns( complex, filtration_to_cell_map, cell_to_filtration_map, cur_dim, dualize, unreduced_columns );
- 0.0s 88 MB 89 MB 0 MB reduction_kernel( complex.get_num_cells(), unreduced_columns, reduced_columns );
- 0.3s 89 MB 122 MB 38 MB generate_unreduced_columns( complex, filtration_to_cell_map, cell_to_filtration_map, cur_dim, dualize, unreduced_columns );
- 0.1s 102 MB 142 MB 0 MB reduction_kernel( complex.get_num_cells(), unreduced_columns, reduced_columns );
- 0.1s 141 MB 142 MB 3 MB dipha::outputs::save_persistence_diagram( output_filename, complex, filtration_to_cell_map, reduced_columns, dualize, upper_dim );
-
-Overall running time in seconds:
-0.8
-
-Reduction kernel running time in seconds:
-0.1
-
-Overall peak mem in GB of all ranks:
-0.1
-
-Individual peak mem in GB of per rank:
-0.1
-
-Maximal communication traffic (without sorting) in GB between any pair of nodes:
-0.1
-
-Total communication traffic (without sorting) in GB between all pairs of nodes:
-0.1
- 0.81 real 0.65 user 0.13 sys
- 149577728 maximum resident set size
- 0 average shared memory size
- 0 average unshared data size
- 0 average unshared stack size
- 51467 page reclaims
- 0 page faults
- 0 swaps
- 0 block input operations
- 1 block output operations
- 0 messages sent
- 0 messages received
- 0 signals received
- 7 voluntary context switches
- 1069 involuntary context switches
diff --git a/benchmarks/sphere_3_64/gudhi.txt b/benchmarks/sphere_3_64/gudhi.txt
deleted file mode 100644
index ee69c4a..0000000
--- a/benchmarks/sphere_3_64/gudhi.txt
+++ /dev/null
@@ -1,18 +0,0 @@
-uli:Gudhi_library_1.3.0 uli$ /usr/bin/time -l ~/Source/Gudhi_library_1.3.0/example/Persistent_cohomology/rips_persistence -d3 -p2 ~/Bitbucket/phat-paper/benchmark/point\ cloud/sphere_3_64_points.dat -o/dev/null
-The complex contains 679120 simplices
- and has dimension 3
- 0.45 real 0.75 user 0.02 sys
- 37740544 maximum resident set size
- 0 average shared memory size
- 0 average unshared data size
- 0 average unshared stack size
- 9124 page reclaims
- 122 page faults
- 0 swaps
- 1 block input operations
- 0 block output operations
- 0 messages sent
- 0 messages received
- 0 signals received
- 14 voluntary context switches
- 2324 involuntary context switches
diff --git a/benchmarks/sphere_3_64/phat.txt b/benchmarks/sphere_3_64/phat.txt
deleted file mode 100644
index 40c18fe..0000000
--- a/benchmarks/sphere_3_64/phat.txt
+++ /dev/null
@@ -1,17 +0,0 @@
-uli:phat uli$ /usr/bin/time -l ~/Bitbucket/phat/benchmark --primal --bit_tree_pivot_column --twist ~/Bitbucket/phat-paper/benchmark/phat/sphere_3_64_coboundary.phat
-/Users/uli/Bitbucket/phat-paper/benchmark/phat/sphere_3_64_coboundary.phat, bit_tree_pivot_column, twist, primal, Reduction time: 0.019s
- 0.22 real 0.15 user 0.04 sys
- 47742976 maximum resident set size
- 0 average shared memory size
- 0 average unshared data size
- 0 average unshared stack size
- 11669 page reclaims
- 2 page faults
- 0 swaps
- 2 block input operations
- 0 block output operations
- 0 messages sent
- 0 messages received
- 0 signals received
- 4 voluntary context switches
- 106 involuntary context switches
diff --git a/benchmarks/sphere_3_64/ripser.txt b/benchmarks/sphere_3_64/ripser.txt
deleted file mode 100644
index 761403c..0000000
--- a/benchmarks/sphere_3_64/ripser.txt
+++ /dev/null
@@ -1,103 +0,0 @@
-uli:ripser uli$ c++ -std=c++11 ripser.cpp -o ripser -Ofast -D NDEBUG -D FILE_FORMAT_DIPHA -D PRINT_PERSISTENCE_PAIRS && /usr/bin/time -l ./ripser --dim 2 ~/Bitbucket/phat-paper/benchmark/dipha/sphere_3_64.complex
-distance matrix with 64 points
-distance matrix transformed to lower triangular form
-value range: [0.00391946,1.99927]
-persistence intervals in dim 0:
- [0,0.147289)
- [0,0.111798)
- [0,0.279354)
- [0,0.379849)
- [0,0.217485)
- [0,0.179609)
- [0,0.297053)
- [0,0.227524)
- [0,0.334523)
- [0,0.205129)
- [0,0.266643)
- [0,0.076909)
- [0,0.424333)
- [0,0.0802451)
- [0,0.141103)
- [0,0.154095)
- [0,0.280747)
- [0,0.561426)
- [0,0.255364)
- [0,0.218561)
- [0,0.344005)
- [0,0.457212)
- [0,0.339394)
- [0,0.184757)
- [0,0.193804)
- [0,0.276431)
- [0,0.276383)
- [0,0.273482)
- [0,0.162738)
- [0,0.208851)
- [0,0.00391946)
- [0,0.168587)
- [0,0.231288)
- [0,0.370337)
- [0,0.151879)
- [0,0.336643)
- [0,0.176636)
- [0,0.0814685)
- [0,0.287316)
- [0,0.0633425)
- [0,0.46675)
- [0,0.169115)
- [0,0.387245)
- [0,0.354112)
- [0,0.236525)
- [0,0.377019)
- [0,0.396994)
- [0,0.58991)
- [0,0.374531)
- [0,0.374138)
- [0,0.439977)
- [0,0.487279)
- [0,0.231179)
- [0,0.200333)
- [0,0.401576)
- [0,0.574945)
- [0,0.252863)
- [0,0.173684)
- [0,0.284319)
- [0,0.355419)
- [0,0.23879)
- [0,0.381084)
- [0,0.532104)
- [0, )
-persistence intervals in dim 1:
- [0.84172,1.04196)
- [0.763446,0.863406)
- [0.727244,0.74155)
- [0.708398,0.757279)
- [0.655113,0.849319)
- [0.62495,0.753672)
- [0.60904,0.682559)
- [0.607973,0.672219)
- [0.606907,0.829538)
- [0.588045,1.04527)
- [0.57698,0.769491)
- [0.559498,0.586113)
- [0.525224,0.645181)
- [0.445398,0.448892)
- [0.412572,0.478334)
- [0.376457,0.63549)
-persistence intervals in dim 2:
- [1.10328,1.67029)
- 0.05 real 0.05 user 0.00 sys
- 4300800 maximum resident set size
- 0 average shared memory size
- 0 average unshared data size
- 0 average unshared stack size
- 1054 page reclaims
- 9 page faults
- 0 swaps
- 0 block input operations
- 0 block output operations
- 0 messages sent
- 0 messages received
- 0 signals received
- 1 voluntary context switches
- 10 involuntary context switches
diff --git a/benchmarks/sphere_3_64/sphere_3_64_points.dat b/benchmarks/sphere_3_64/sphere_3_64_points.dat
deleted file mode 100644
index f2e07c2..0000000
--- a/benchmarks/sphere_3_64/sphere_3_64_points.dat
+++ /dev/null
@@ -1,64 +0,0 @@
- 1.6967853e-001 6.9526921e-001 -6.9843391e-001
- -1.2440200e-001 -9.8807545e-001 -9.0725107e-002
- 4.6612609e-001 -6.9230289e-001 5.5085676e-001
- 1.8612823e-001 -9.7510082e-001 1.2055984e-001
- -7.1927914e-001 -2.5365133e-001 -6.4676002e-001
- 4.8498992e-001 -1.4952707e-001 -8.6164171e-001
- 1.2994254e-001 8.1580322e-001 -5.6354240e-001
- 7.1493417e-001 2.6955279e-001 -6.4514372e-001
- -9.4140505e-001 -3.2007298e-001 -1.0634765e-001
- -7.3567662e-001 -6.6376431e-001 -1.3489569e-001
- 8.3981063e-001 2.0091343e-001 -5.0433312e-001
- -5.9736973e-001 -1.2209303e-001 -7.9261763e-001
- -6.5711216e-002 -5.5174306e-001 8.3142145e-001
- 6.7610731e-001 5.2361215e-001 5.1837170e-001
- -4.7810639e-001 6.3596839e-001 -6.0577099e-001
- 3.7026575e-001 -8.8603126e-001 -2.7901951e-001
- -7.4184670e-001 5.2724065e-001 4.1434378e-001
- 9.1336650e-001 -1.0160452e-001 3.9425646e-001
- 6.5199344e-001 1.4726224e-001 7.4378652e-001
- 5.5110520e-001 -4.8117211e-002 8.3304729e-001
- 6.8006714e-001 -6.8207099e-001 2.6886400e-001
- -6.2244937e-001 -6.3128176e-001 4.6264469e-001
- 1.0563991e-001 -9.9403884e-001 -2.6962898e-002
- -1.0377075e-001 -6.5439201e-001 -7.4900115e-001
- -7.2537034e-001 5.7582066e-001 3.7718487e-001
- -7.7101634e-002 -8.2604114e-001 5.5831119e-001
- 8.6042320e-002 7.1235169e-001 -6.9652838e-001
- -4.4708647e-001 5.1540163e-001 -7.3107787e-001
- 4.2937222e-001 7.5191586e-001 5.0026197e-001
- -3.1408638e-001 5.0535108e-001 -8.0372261e-001
- -4.3472310e-001 -1.8777026e-001 8.8077134e-001
- 6.8119350e-001 -5.9971337e-002 -7.2964296e-001
- -6.2533443e-001 -7.4462865e-001 -2.3342028e-001
- 8.9906213e-002 7.1171462e-001 -6.9669159e-001
- -4.9358034e-001 4.2416065e-002 -8.6866526e-001
- -9.8031989e-001 -1.9729587e-001 -6.8733226e-003
- 4.2941379e-001 6.2115734e-001 -6.5556644e-001
- 2.7834116e-001 -8.0348379e-001 -5.2625088e-001
- 5.0674353e-001 8.3337890e-001 2.2065949e-001
- -3.5289041e-001 -7.4575871e-001 5.6507725e-001
- -4.8181124e-001 -7.6143979e-001 4.3366735e-001
- 1.4086166e-001 2.3438350e-001 -9.6188480e-001
- 8.6452455e-001 4.8658206e-001 -1.2583799e-001
- -2.9361444e-001 9.3139821e-001 -2.1514630e-001
- 5.8653881e-001 -8.0974084e-001 1.7087834e-002
- -4.9750489e-001 8.1024881e-001 -3.0981567e-001
- -8.8649898e-001 4.2989173e-001 -1.7120943e-001
- 9.9529224e-001 -9.6889825e-002 2.3919851e-003
- -1.7935662e-001 -4.5583202e-001 8.7180753e-001
- 1.5561095e-002 1.7363791e-001 -9.8468661e-001
- 6.2367625e-001 -7.7752570e-001 8.0509194e-002
- -2.5914423e-002 5.1496707e-001 8.5681816e-001
- 4.4088227e-001 8.6281982e-001 2.4731513e-001
- 1.5254564e-001 9.8002375e-001 -1.2760593e-001
- 7.7022132e-002 4.2053433e-001 -9.0400137e-001
- 4.8946943e-002 2.1154745e-001 9.7614132e-001
- -3.2771891e-002 9.6537661e-001 -2.5879338e-001
- 8.7612617e-001 1.8896098e-001 4.4350499e-001
- 4.6401786e-001 1.0179825e-001 8.7995713e-001
- -3.1962435e-001 1.5496430e-001 -9.3478679e-001
- 1.0843907e-001 -1.6358769e-001 9.8055088e-001
- 6.6213049e-001 5.2583458e-001 -5.3392996e-001
- 7.1613943e-001 1.6290934e-001 -6.7867877e-001
- 9.4784217e-001 -1.7099088e-001 2.6899321e-001
generated by cgit v1.2.3 (git 2.39.1) at 2024-05-25 06:12:26 +0000